Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 52.88 | 77.69 |
| VIT_00s0309g00080.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 57.07 | 64.5 |
| CDY09652 | Canola | plastid | 100.0 | 62.83 |
| CDY09656 | Canola | plastid | 100.0 | 62.42 |
| Bra012683.1-P | Field mustard | plastid | 100.0 | 62.22 |
| CDX90492 | Canola | plastid | 100.0 | 62.22 |
| CDY35605 | Canola | plastid | 98.43 | 62.05 |
| AT4G17040.1 | Thale cress | plastid | 98.95 | 61.97 |
| CDY42955 | Canola | plastid | 98.95 | 61.97 |
| VIT_00s0309g00040.t01 | Wine grape | endoplasmic reticulum | 50.79 | 61.01 |
| VIT_00s0204g00220.t01 | Wine grape | plastid | 87.96 | 57.53 |
| Solyc08g077890.2.1 | Tomato | plastid | 86.91 | 54.97 |
| PGSC0003DMT400067452 | Potato | plastid | 86.91 | 54.97 |
| KRH57519 | Soybean | plastid | 87.43 | 54.93 |
| KRH04225 | Soybean | plastid | 86.91 | 54.61 |
| Os01t0271400-00 | Rice | nucleus, plasma membrane, plastid | 81.68 | 52.35 |
| TraesCS3B01G216800.1 | Wheat | plastid | 78.01 | 52.28 |
| TraesCS3A01G187300.1 | Wheat | plastid | 78.01 | 52.28 |
| Zm00001d040322_P002 | Maize | plastid | 79.06 | 52.25 |
| EES00561 | Sorghum | plastid | 79.58 | 52.23 |
| GSMUA_Achr9P24480_001 | Banana | plastid | 87.43 | 50.15 |
| HORVU3Hr1G038610.4 | Barley | plastid | 74.35 | 50.0 |
| CDY71339 | Canola | endoplasmic reticulum | 31.94 | 47.66 |
| TraesCS3D01G191100.2 | Wheat | plastid | 78.01 | 47.6 |
| CDY43468 | Canola | plastid | 41.88 | 45.45 |
| CDX69964 | Canola | plastid | 31.41 | 40.0 |
| CDY21523 | Canola | mitochondrion | 36.13 | 28.99 |
| CDY02210 | Canola | mitochondrion | 34.55 | 28.09 |
| CDY61915 | Canola | mitochondrion | 34.55 | 27.97 |
| CDY31112 | Canola | plastid | 45.55 | 26.93 |
| CDY32150 | Canola | plastid | 45.03 | 26.46 |
| CDY68541 | Canola | cytosol | 17.28 | 26.4 |
| CDX95009 | Canola | plastid | 42.41 | 26.38 |
| CDY39425 | Canola | plastid | 36.13 | 23.96 |
| CDY51306 | Canola | plastid | 34.55 | 23.83 |
| CDY38981 | Canola | plastid | 36.13 | 23.71 |
| CDY30078 | Canola | plastid | 34.03 | 23.3 |
| CDX98066 | Canola | plastid | 34.03 | 23.3 |
| CDY26563 | Canola | plastid | 33.51 | 23.02 |
| CDY69283 | Canola | plastid | 25.13 | 22.86 |
| CDX89962 | Canola | plastid | 34.55 | 22.45 |
| CDY15433 | Canola | plastid | 34.55 | 21.71 |
| CDY46278 | Canola | cytosol | 25.65 | 21.68 |
| CDY15250 | Canola | plastid | 34.55 | 21.57 |
| CDY59367 | Canola | plastid | 40.31 | 19.85 |
| CDY36212 | Canola | plastid | 32.46 | 19.81 |
| CDX96137 | Canola | plastid | 32.46 | 19.81 |
| CDY03582 | Canola | plastid | 40.31 | 19.79 |
| CDY21009 | Canola | plastid | 26.18 | 18.52 |
| CDY31211 | Canola | plastid | 26.18 | 18.52 |
| CDY34832 | Canola | plastid | 26.18 | 18.32 |
| CDY34630 | Canola | plastid | 14.14 | 15.17 |
| CDY15997 | Canola | plastid | 33.51 | 13.11 |
Protein Annotations
| MapMan:19.4.2.9.2 | Gene3D:3.90.226.10 | GO:A0A078JYE7 | UniProt:A0A078JYE7 | EnsemblPlants:CDY71709 | ProteinID:CDY71709 |
| ProteinID:CDY71709.1 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004252 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00019540001 | PFAM:PF00574 | PRINTS:PR00127 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF25 | SUPFAM:SSF52096 |
| UniParc:UPI0004EF08D0 | : | : | : | : | : |
Description
BnaCnng74080DATP-dependent Clp protease proteolytic subunit (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JYE7]
Coordinates
chrLK047052:-:50..2498
Molecular Weight (calculated)
21306.7 Da
IEP (calculated)
5.852
GRAVY (calculated)
-0.175
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: IVYLGMSLVP SVTELILAEF LYLQYEDEEK PIYLYINSTG TTKNGEKLGY DTEAFAIYDV MGYVKPPIFT LCVGNAWGEA ALLLTAGAKG NRSALPSSTI
101: MIKQPIARFQ GQATDVEIAR KEINHIKTEM VKLYSKHIGK SPEQIEADMK RPKYFSPSEA VEYGIIDKVV YNERGSQDRG VVSDLKKAQL I
101: MIKQPIARFQ GQATDVEIAR KEINHIKTEM VKLYSKHIGK SPEQIEADMK RPKYFSPSEA VEYGIIDKVV YNERGSQDRG VVSDLKKAQL I
001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSVV
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSVV
Arabidopsis Description
ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.