CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68541	Canola	cytosol	39.52	66.4
CDY30078	Canola	plastid	63.33	47.67
CDX98066	Canola	plastid	63.33	47.67
CDY26563	Canola	plastid	62.86	47.48
VIT_02s0025g05140.t01	Wine grape	plastid	54.76	39.52
Solyc08g079620.2.1	Tomato	plastid	53.81	39.1
PGSC0003DMT400010090	Potato	cytosol, plastid	53.81	39.1
KRH57313	Soybean	endoplasmic reticulum, extracellular	56.19	37.82
GSMUA_Achr1P08260_001	Banana	plastid	50.95	37.28
KXG19238	Sorghum	plastid	49.52	35.62
Os06t0136800-01	Rice	plastid	49.05	34.68
KRH04045	Soybean	mitochondrion	56.19	34.4
TraesCS7D01G072100.1	Wheat	plastid	46.67	32.89
TraesCS7A01G076400.1	Wheat	plastid	46.67	32.67
Zm00001d045430_P002	Maize	plastid	50.0	32.41
HORVU7Hr1G017670.1	Barley	plastid	46.67	30.43
TraesCS4A01G374600.2	Wheat	plastid	45.24	30.06
CDY15997	Canola	plastid	63.33	27.25
CDX69964	Canola	plastid	18.57	26.0
CDY71709	Canola	endoplasmic reticulum, extracellular	22.86	25.13
CDY21523	Canola	mitochondrion	24.76	21.85
CDY51306	Canola	plastid	27.62	20.94
CDY61915	Canola	mitochondrion	23.33	20.76
CDY02210	Canola	mitochondrion	22.38	20.0
CDX89962	Canola	plastid	27.62	19.73
CDY15433	Canola	plastid	27.62	19.08
CDY71339	Canola	endoplasmic reticulum	11.43	18.75
CDY15250	Canola	plastid	27.14	18.63
CDY39425	Canola	plastid	24.29	17.71
CDY38981	Canola	plastid	24.29	17.53
CDY35605	Canola	plastid	25.24	17.49
CDY09652	Canola	plastid	25.24	17.43
CDY42955	Canola	plastid	25.24	17.38
CDY09656	Canola	plastid	25.24	17.32
CDX90492	Canola	plastid	25.24	17.26
CDY43468	Canola	plastid	14.29	17.05
CDY31211	Canola	plastid	21.43	16.67
CDY21009	Canola	plastid	21.43	16.67
CDY34832	Canola	plastid	21.43	16.48
CDX96137	Canola	plastid	23.81	15.97
CDY36212	Canola	plastid	23.33	15.65
CDY46278	Canola	cytosol	15.24	14.16
CDY31112	Canola	plastid	21.43	13.93
CDY32150	Canola	plastid	21.43	13.85
CDX95009	Canola	plastid	20.0	13.68
CDY34630	Canola	plastid	10.48	12.36
CDY59367	Canola	plastid	21.9	11.86
CDY03582	Canola	plastid	21.43	11.57

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	GO:A0A078JP28	UniProt:A0A078JP28	EnsemblPlants:CDY69283	ProteinID:CDY69283
ProteinID:CDY69283.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00086164001	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF15	SUPFAM:SSF52096
UniParc:UPI0004EEDD18	SEG:seg	:	:	:	:

Description

BnaCnng62830DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078JP28]

Coordinates

chrLK039044:+:1639..3505

Molecular Weight (calculated)

23339.1 Da

IEP (calculated)

10.076

GRAVY (calculated)

-0.208

Length

210 amino acids

Sequence
(BLAST)

001: MSSSDVVAQS AFDVLRLGRS SQFIVARLLR FWTPKTSRSM VNSWESLYSS YTSISQCSSS GIVQGKRVGH GTLMKSFSNQ ILATMLYLDT LDDSRRIYMY
101: LNGPGGDLTP SLAIYDTMKS LKSFLLAAAE KGQRFAMPLL RIALQSPAGA ARGQADDIQN EANLRKRIFK DLSRLKRFNS EEAIEYGLII VRPPRIKDDV
201: PLQDETSGLG

Best Arabidopsis Sequence Match ( AT1G12410.1 )
(BLAST)

001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG

Arabidopsis Description

CLPR2ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.