CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014229.1-P	Field mustard	plastid	100.0	100.0
CDY03582	Canola	plastid	97.94	97.69
AT1G49970.1	Thale cress	plastid	94.59	94.83
CDY46278	Canola	cytosol	49.74	85.4
KRH35674	Soybean	plastid	68.81	71.77
KRG91103	Soybean	plastid	68.3	71.24
VIT_03s0091g00700.t01	Wine grape	plastid	70.1	70.1
PGSC0003DMT400065220	Potato	plastid	66.49	65.65
Solyc10g049710.1.1	Tomato	plastid	64.43	65.1
GSMUA_Achr2P08390_001	Banana	plastid	66.75	65.08
EES20050	Sorghum	plastid	53.35	53.35
Os05t0592100-01	Rice	plastid	52.84	53.11
Zm00001d039167_P001	Maize	plastid	52.32	52.32
TraesCS1A01G437500.2	Wheat	plastid	51.8	51.94
TraesCS1B01G472100.1	Wheat	plastid	51.29	51.69
TraesCS1D01G445300.1	Wheat	plastid	51.29	51.16
HORVU1Hr1G094480.1	Barley	plastid	51.8	47.41
CDY71339	Canola	endoplasmic reticulum	13.92	42.19
CDY71709	Canola	endoplasmic reticulum, extracellular	19.85	40.31
CDY31112	Canola	plastid	28.61	34.37
CDY32150	Canola	plastid	28.61	34.15
CDY09656	Canola	plastid	25.26	32.03
CDY35605	Canola	plastid	25.0	32.01
CDX90492	Canola	plastid	25.26	31.92
CDY09652	Canola	plastid	25.0	31.91
CDY42955	Canola	plastid	25.0	31.8
CDX95009	Canola	plastid	24.74	31.27
CDY61915	Canola	mitochondrion	17.78	29.24
CDY02210	Canola	mitochondrion	17.53	28.94
CDX69964	Canola	plastid	11.08	28.67
CDY21523	Canola	mitochondrion	17.27	28.15
CDY43468	Canola	plastid	12.63	27.84
CDY26563	Canola	plastid	19.59	27.34
CDX98066	Canola	plastid	19.07	26.52
CDY68541	Canola	cytosol	8.51	26.4
CDY30078	Canola	plastid	18.81	26.16
CDX89962	Canola	plastid	19.07	25.17
CDY51306	Canola	plastid	17.78	24.91
CDY15250	Canola	plastid	18.81	23.86
CDY15433	Canola	plastid	18.3	23.36
CDY38981	Canola	plastid	17.27	23.02
CDY31211	Canola	plastid	15.98	22.96
CDY21009	Canola	plastid	15.98	22.96
CDY39425	Canola	plastid	17.01	22.92
CDX96137	Canola	plastid	18.04	22.36
CDY34832	Canola	plastid	15.72	22.34
CDY69283	Canola	plastid	11.86	21.9
CDY36212	Canola	plastid	17.53	21.73
CDY34630	Canola	plastid	8.51	18.54
CDY15997	Canola	plastid	19.33	15.37

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	GO:A0A078J1F8	UniProt:A0A078J1F8	EnsemblPlants:CDY59367	ProteinID:CDY59367
ProteinID:CDY59367.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00026009001	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF18	SUPFAM:SSF52096
UniParc:UPI0002546180	SEG:seg	:	:	:	:

Description

BnaA08g29600DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078J1F8]

Coordinates

chrLK033755:+:19764..22731

Molecular Weight (calculated)

42639.7 Da

IEP (calculated)

8.992

GRAVY (calculated)

-0.489

Length

388 amino acids

Sequence
(BLAST)

001: MATSMVSPLT SQLNHESVCS KFVLPKSPFM SGSKLFSSNM PCSSVPRRTR RSNCFASAKD MSFDHIPKQF RGDNLKDGVT QNFKNVPQYF YGLNPAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRSNYLDNG GTWSMSGMNA ADPKRYSMSV QMYRGGGGGG GSARPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPSK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKTKEQINED IKRPKYLQAQ AAIDYGIADK IANSQDSSFE KRDYDGSLAQ RAMGRPGGGN PTSPAGLR

Best Arabidopsis Sequence Match ( AT1G49970.1 )
(BLAST)

001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR

Arabidopsis Description

CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.