Factsheet for Solyc10g049710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065220	Potato	plastid	91.93	89.82
KRG91103	Soybean	plastid	66.67	68.82
KRH35674	Soybean	plastid	66.67	68.82
VIT_03s0091g00700.t01	Wine grape	plastid	68.49	67.78
AT1G49970.1	Thale cress	plastid	65.36	64.86
Bra014229.1-P	Field mustard	plastid	65.1	64.43
CDY59367	Canola	plastid	65.1	64.43
CDY03582	Canola	plastid	65.1	64.27
CDY46278	Canola	cytosol	37.76	64.16
GSMUA_Achr2P08390_001	Banana	plastid	64.84	62.56
Os05t0592100-01	Rice	plastid	52.86	52.59
EES20050	Sorghum	plastid	52.34	51.8
TraesCS1B01G472100.1	Wheat	plastid	51.3	51.17
TraesCS1A01G437500.2	Wheat	plastid	51.56	51.16
Zm00001d039167_P001	Maize	plastid	51.3	50.77
TraesCS1D01G445300.1	Wheat	plastid	51.04	50.39
HORVU1Hr1G094480.1	Barley	plastid	51.3	46.46
Solyc08g077890.2.1	Tomato	plastid	26.04	33.11
Solyc01g099690.2.1	Tomato	plastid	25.26	29.75
Solyc04g009310.2.1	Tomato	plastid	15.1	24.58
Solyc08g079620.2.1	Tomato	plastid	17.97	23.88
Solyc08g075750.2.1	Tomato	plastid	17.45	22.19
Solyc01g100520.2.1	Tomato	plastid	17.19	22.07
Solyc02g091280.2.1	Tomato	plastid	17.19	21.36
Solyc01g007490.2.1	Tomato	plastid	11.46	21.36
Solyc10g051310.1.1	Tomato	plastid	13.28	18.55
Solyc09g065790.1.1	Tomato	cytosol	6.25	13.64

Protein Annotations

EnsemblPlants:Solyc10g049710.1.1	EnsemblPlantsGene:Solyc10g049710.1	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	PANTHER:PTHR10381	PANTHER:PTHR10381:SF18	PFAM:PF00574	PRINTS:PR00127
SEG:seg	SUPFAM:SSF52096	UniParc:UPI000276A208	UniProt:K4D0C8	MapMan:19.4.2.9.2	:

Description

ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G49970) UniProtKB/Swiss-Prot;Acc:Q9XJ35]

Coordinates

chr10:+:46425610..46430753

Molecular Weight (calculated)

42529.5 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.429

Length

384 amino acids

Sequence
(BLAST)

001: MSMASSLLLS PLSCPTLANN PSHIVLNKST FLPTPNFFFS DSLHRPNAGV RGYSYSSPVA QSFNHIPKQF RQDYLKDGLL NNYKNAPQYL YGLSPSQMDM
101: FMTEDNPARR QSGSVTEENI SSSHNYLKNG GMWSMSGMNK QGPSTCSMSV SMYGGGGARS DRSPTAPPDL PSLLLDARIV YLGMPIVEAV TELIVAQFMW
201: LDFDNPTKPV YLYINSSGTQ NDEMETVGSE TEAYAIADMI RYCKSDVYTV NCGMAFGQAA MLLSQGKKGF RAVQPNSSTK LYLPKVSKSS GSPTELWIKA
301: KELESNSEYY LELLSEGIGK PKEEIKKDIL RPKYFRAQEA IDYGLADKII SSSDDAFDKR NYEEMLIQSR MSRPGAQAAP SGFR

Best Arabidopsis Sequence Match ( AT1G49970.1 )
(BLAST)

001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR

Arabidopsis Description

CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.