Factsheet for Solyc01g100520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51306	Canola	plastid	72.24	77.98
VIT_07s0005g01530.t01	Wine grape	plastid	75.25	77.85
Bra033332.1-P	Field mustard	plastid	76.25	77.55
CDX89962	Canola	plastid	76.25	77.55
Zm00001d047634_P002	Maize	cytosol	61.2	77.54
AT1G02560.1	Thale cress	plastid	76.92	77.18
KRH31786	Soybean	nucleus, plastid	76.25	75.25
CDY15250	Canola	plastid	76.92	75.16
Bra030504.1-P	Field mustard	plastid	74.58	74.58
KRH69210	Soybean	nucleus, plastid	76.92	73.95
CDY15433	Canola	plastid	74.58	73.36
GSMUA_Achr8P22320_001	Banana	plastid	71.91	71.67
TraesCS4D01G184400.1	Wheat	plastid	67.56	71.63
TraesCS4A01G121500.1	Wheat	plastid	67.56	71.63
TraesCS4B01G181600.1	Wheat	plastid	67.22	71.28
EER92371	Sorghum	plastid	66.89	70.67
Os03t0308100-01	Rice	plastid	66.56	70.57
HORVU4Hr1G053660.1	Barley	plastid	67.56	66.01
Zm00001d028895_P001	Maize	plastid	67.22	64.22
KRH68271	Soybean	plastid	60.54	60.13
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	87.96	46.63
Solyc04g009310.2.1	Tomato	plastid	33.44	42.37
Solyc02g091280.2.1	Tomato	plastid	35.79	34.63
Solyc01g007490.2.1	Tomato	plastid	23.41	33.98
Solyc10g051310.1.1	Tomato	plastid	30.43	33.09
Solyc08g075750.2.1	Tomato	plastid	32.44	32.12
Solyc08g079620.2.1	Tomato	plastid	27.09	28.03
Solyc08g077890.2.1	Tomato	plastid	27.09	26.82
Solyc09g065790.1.1	Tomato	cytosol	14.05	23.86
Solyc01g099690.2.1	Tomato	plastid	22.07	20.25
Solyc10g049710.1.1	Tomato	plastid	22.07	17.19

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EMBL:AJ308540	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008236	GO:GO:0009507	GO:GO:0009532	GO:GO:0009534	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009840	GO:GO:0009941	GO:GO:0016787	GO:GO:0019538
HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381
PANTHER:PTHR10381:SF12	UniProt:Q93YH0	MEROPS:S14.001	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc01g100520.2	EnsemblPlants:Solyc01g100520.2.1
UniParc:UPI000009F69F	:	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit 5, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G02560) UniProtKB/Swiss-Prot;Acc:Q9S834]

Coordinates

chr1:-:90526868..90531599

Molecular Weight (calculated)

32371.8 Da

IEP (calculated)

8.806

GRAVY (calculated)

-0.148

Length

299 amino acids

Sequence
(BLAST)

001: MAHSCIATTS SLSKYNSAIF PSDYCNISPI SLQFKRLSLR KVKAVGKVKS RGNSTVKAVY SGGDWDLAKA SRSSGIWSIR DDVQIPSSPY FPTYAAQGQG
101: PPPMVQERFQ SVISQLFQYR IIRCGGAVDD DMANVIVAQL LYLDAVDPTK DIVMYVNSPG GSVTAGMAVF DTMRHIRPDV STVCVGLAAS MGAFLLSAGT
201: KGKRYSLPNS RIMIHQPLGG AQGGQSDIEI QANEMLHHKA NLNGYLAYQT GQSLDRINQD TDRDFFMSAK EAKEYGLIDG VIMNPMKALQ PLAAAAEQS

Best Arabidopsis Sequence Match ( AT1G02560.1 )
(BLAST)

001: MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA

Arabidopsis Description

CLPP5ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WMF0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.