Factsheet for Solyc01g007490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g100520.2.1
Solyc02g091280.2.1
Solyc03g007110.2.1
Solyc08g075750.2.1
Solyc08g077890.2.1
Solyc08g079620.2.1
Solyc08g079660.2.1
Solyc10g049710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00670.1	Solyc01g100520.2.1	AT1G02560.1	14593120
ATCG00670.1	Solyc08g079620.2.1	AT1G12410.1	14593120
ATCG00670.1	Solyc10g049710.1.1	AT1G49970.1	14593120
ATCG00670.1	Solyc02g091280.2.1	AT1G66670.1	14593120
ATCG00670.1	Solyc08g079660.2.1	AT4G12060.1	14593120
ATCG00670.1	Solyc08g077890.2.1	AT4G17040.1	14593120
ATCG00670.1	Solyc03g007110.2.1	AT4G25370.1	14593120
ATCG00670.1	Solyc08g075750.2.1	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055547	Potato	cytosol	32.04	95.65
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	45.63	89.52
ATCG00670.1	Thale cress	cytosol	71.36	75.0
TraesCS1A01G111400.1	Wheat	cytosol	35.44	64.04
HORVU3Hr1G044750.2	Barley	cytosol	39.32	58.7
HORVU0Hr1G027550.1	Barley	cytosol	60.68	57.87
HORVU5Hr1G065060.1	Barley	cytosol	60.68	57.87
HORVU7Hr1G065830.1	Barley	cytosol	60.68	57.87
GRMZM5G804708_P01	Maize	plastid	60.19	57.41
HORVU0Hr1G026150.1	Barley	cytosol, peroxisome, plastid	59.71	56.94
HORVU0Hr1G029900.1	Barley	cytosol, peroxisome, plastid	59.71	56.94
HORVU0Hr1G036940.1	Barley	cytosol, peroxisome, plastid	59.71	56.94
HORVU0Hr1G037900.1	Barley	cytosol, peroxisome, plastid	59.71	56.94
TraesCS3D01G053300.1	Wheat	cytosol	59.71	56.94
HORVU6Hr1G023010.1	Barley	cytosol, peroxisome, plastid	59.71	56.94
HORVU6Hr1G037220.1	Barley	cytosol, peroxisome, plastid	59.71	56.94
HORVU6Hr1G049380.1	Barley	cytosol, peroxisome, plastid	59.71	56.94
AGP50779	Barley	cytosol, peroxisome, plastid	59.71	56.94
TraesCSU01G266900.1	Wheat	cytosol	50.0	56.91
CAA33972	Rice	cytosol	59.22	56.48
TraesCS3B01G187300.1	Wheat	cytosol	59.22	56.48
TraesCS1D01G435100.1	Wheat	cytosol	59.22	56.48
TraesCS1D01G182500.1	Wheat	cytosol, peroxisome, plastid	49.03	55.8
HORVU3Hr1G053800.1	Barley	endoplasmic reticulum	36.89	54.68
Solyc09g065790.1.1	Tomato	cytosol	45.63	53.41
TraesCS2D01G271200.1	Wheat	cytosol	50.97	53.03
TraesCS5D01G009400.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	50.97	52.24
TraesCS3A01G215600.1	Wheat	cytosol	42.23	47.28
Solyc04g009310.2.1	Tomato	plastid	35.44	30.93
Solyc08g079620.2.1	Tomato	plastid	40.29	28.72
Solyc10g051310.1.1	Tomato	plastid	32.04	24.0
Solyc02g091280.2.1	Tomato	plastid	35.92	23.95
Solyc01g100520.2.1	Tomato	plastid	33.98	23.41
Solyc08g075750.2.1	Tomato	plastid	31.55	21.52
Solyc08g077890.2.1	Tomato	plastid	28.16	19.21
Solyc01g099690.2.1	Tomato	plastid	24.76	15.64
Solyc10g049710.1.1	Tomato	plastid	21.36	11.46

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_Ser_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	UniProt:K4ASV2	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381
PANTHER:PTHR10381	PANTHER:PTHR10381:SF19	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc01g007490.2	EnsemblPlants:Solyc01g007490.2.1	UniParc:UPI00027628FB

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:K4ASV2]

Coordinates

chr1:-:1867188..1869330

Molecular Weight (calculated)

23220.2 Da

IEP (calculated)

4.857

GRAVY (calculated)

0.147

Length

206 amino acids

Sequence
(BLAST)

001: MPIGVPRVVF RNPGDPISSW VDIYNRLYRE RLLFLGQGIG TELSNQLIGL MLYLSMEDEN KDLYLFVNSP GGWVIPGIAI YDTMQFVRPD IHTICLGLAA
101: SMGSFILAGG QLTKRIAFPH AWVMIHEPYS GFYMAQVGEF VLEAIEMAKL RETLTRVYAE KTGQPVWVIH EDMERDIFMS ATEAQAYGIV DFVAVQGKEH
201: GFHADL

Best Arabidopsis Sequence Match ( ATCG00670.1 )
(BLAST)

001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ

Arabidopsis Description

CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.