Factsheet for Solyc08g079660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007490.2.1
Solyc01g100520.2.1
Solyc02g091280.2.1
Solyc03g007110.2.1
Solyc08g075750.2.1
Solyc08g077890.2.1
Solyc08g079620.2.1
Solyc09g065790.1.1
Solyc10g049710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	Solyc01g100520.2.1	AT1G02560.1	14593120
AT4G12060.1	Solyc08g079620.2.1	AT1G12410.1	14593120
AT4G12060.1	Solyc10g049710.1.1	AT1G49970.1	14593120
AT4G12060.1	Solyc02g091280.2.1	AT1G66670.1	14593120
AT4G12060.1	Solyc08g077890.2.1	AT4G17040.1	14593120
AT4G12060.1	Solyc03g007110.2.1	AT4G25370.1	14593120
AT4G12060.1	Solyc08g075750.2.1	AT5G45390.1	14593120
AT4G12060.1	Solyc01g007490.2.1	ATCG00670.1	14593120
AT4G12060.1	Solyc09g065790.1.1	ATCG00670.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010010	Potato	plastid	92.05	69.18
GSMUA_Achr11P...	Banana	cytosol	33.89	58.27
GSMUA_Achr5P18820_001	Banana	plastid	44.77	47.56
CDX94486	Canola	plastid	47.7	46.72
KRH77428	Soybean	endoplasmic reticulum, golgi	48.95	45.88
CDX86723	Canola	plastid	45.19	44.26
AT4G12060.1	Thale cress	plastid	44.35	43.98
Bra029436.1-P	Field mustard	plastid	44.77	43.85
Os03t0247000-01	Rice	plastid	41.42	42.67
OQU92918	Sorghum	plastid	40.59	42.17
TraesCS4B01G224500.1	Wheat	plastid	39.75	41.48
TraesCS4D01G225100.1	Wheat	plastid	39.75	41.48
Solyc03g007110.2.1	Tomato	plastid	40.59	41.28
TraesCS4A01G079500.1	Wheat	plastid	39.33	41.05
HORVU4Hr1G063150.3	Barley	plastid	39.75	37.7
Zm00001d028414_P002	Maize	plastid	38.49	37.55
Zm00001d047920_P003	Maize	plastid	39.75	32.99

Protein Annotations

Gene3D:1.10.1780.10	MapMan:19.4.2.9.3	InterPro:Clp_N	InterPro:Clp_N_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0019538	GO:GO:0043424	InterPro:IPR036628	UniProt:K4CNW6	PFAM:PF02861	PANTHER:PTHR11638
PANTHER:PTHR11638:SF124	SUPFAM:SSF81923	EnsemblPlantsGene:Solyc08g079660.2	EnsemblPlants:Solyc08g079660.2.1	UniParc:UPI000276B2FE	:

Description

ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G12060) UniProtKB/Swiss-Prot;Acc:Q8GW78]

Coordinates

chr8:-:63148725..63152209

Molecular Weight (calculated)

26388.9 Da

IEP (calculated)

9.172

GRAVY (calculated)

-0.226

Length

239 amino acids

Sequence
(BLAST)

001: MAVQAISTVA ATSKSINQLN CRGTDSFLWT KNPLELKNLQ CKWLGTPIKF SLQSKNFKQF LSKQCTIRAN VSFVLPRGKS EPTVPIEKIP KWSAKAVKSF
101: TMAELEARKL KYDTTGTEAL ILGMLIEGTN FASKYLMANS ITLLKFREEA IKILGKGDVF HCSPKEPPLT EDAQKALDWA FDEKLKSGNG GEITTTHVLL
201: GVWAQQGSPG YKVLAALGFN DEKAKELENI ITDPGFVDD

Best Arabidopsis Sequence Match ( AT4G12060.1 )
(BLAST)

001: MAAHSSCNFA LTNPIISQID SFSKKKLSVP LYFFSTRKAL TNPWLGVVDS SLSLTSPVSA LQTNRPRRIH KSAISSLPTA NPDLVVSDAK KPKWSWRAIK
101: SFAMGELEAR KLKYPNTGTE ALLMGILIEG TSFTSKFLRA NKIMLYKVRE ETVKLLGKAD MYFFSPEHPP LTEDAQRALD SALDQNLKAG GIGEVMPAHI
201: LLGIWSEVES PGHKILATLG FTDEKSKELE SFASESGFLD E

Arabidopsis Description

CLPT2ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GW78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.