Factsheet for GSMUA_Achr5P18820_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P08260_001
GSMUA_Achr2P08390_001
GSMUA_Achr4P13550_001
GSMUA_Achr5P18820_001
GSMUA_Achr6P01290_001
GSMUA_Achr8P22320_001
GSMUA_Achr9P24480_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12060.1	GSMUA_Achr8P22320_001	AT1G02560.1	14593120
AT4G12060.1	GSMUA_Achr1P08260_001	AT1G12410.1	14593120
AT4G12060.1	GSMUA_Achr2P08390_001	AT1G49970.1	14593120
AT4G12060.1	GSMUA_Achr4P13550_001	AT1G66670.1	14593120
AT4G12060.1	GSMUA_Achr11P...	AT4G17040.1	14593120
AT4G12060.1	GSMUA_Achr9P24480_001	AT4G17040.1	14593120
AT4G12060.1	GSMUA_Achr11P...	AT4G25370.1	14593120
AT4G12060.1	GSMUA_Achr5P18820_001	AT4G25370.1	14593120
AT4G12060.1	GSMUA_Achr6P01290_001	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	53.78	87.05
VIT_16s0022g01840.t01	Wine grape	plastid	62.22	61.4
OQU92918	Sorghum	plastid	55.56	54.35
Solyc03g007110.2.1	Tomato	plastid	56.44	54.04
TraesCS4A01G079500.1	Wheat	plastid	54.67	53.71
TraesCS4D01G225100.1	Wheat	plastid	54.67	53.71
TraesCS4B01G224500.1	Wheat	plastid	54.67	53.71
Os03t0247000-01	Rice	plastid	54.22	52.59
KRH38715	Soybean	plastid	44.89	51.53
KRH09223	Soybean	plastid	56.44	50.4
CDX92700	Canola	plastid	51.56	50.0
KRH38717	Soybean	nucleus, plastid	56.0	50.0
Zm00001d028414_P002	Maize	plastid	54.22	49.8
KRH09224	Soybean	nucleus, plastid	56.44	48.85
CDY49708	Canola	plastid	50.67	48.51
Bra019170.1-P	Field mustard	plastid	50.67	48.51
HORVU4Hr1G063150.3	Barley	plastid	54.22	48.41
CDX86723	Canola	plastid	52.0	47.95
AT4G25370.1	Thale cress	plastid	50.67	47.9
CDX94486	Canola	plastid	51.56	47.54
Bra029436.1-P	Field mustard	plastid	51.56	47.54
AT4G12060.1	Thale cress	plastid	50.67	47.3
KRH77428	Soybean	endoplasmic reticulum, golgi	52.44	46.27
Solyc08g079660.2.1	Tomato	plastid	47.56	44.77
CDX94453	Canola	plastid	24.0	41.54
CDY57285	Canola	plastid	37.33	41.18
Zm00001d047920_P003	Maize	plastid	52.44	40.97
PGSC0003DMT400010010	Potato	plastid	47.11	33.33

Protein Annotations

EnsemblPlants:GSMUA_Achr5P18820_001	EnsemblPlants:GSMUA_Achr5T18820_001	EnsemblPlantsGene:GSMUA_Achr5G18820_001	Gene3D:1.10.1780.10	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:Clp_N	InterPro:Clp_N_dom_sf	InterPro:IPR036628	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124
PFAM:PF02861	SEG:seg	SUPFAM:SSF81923	UniParc:UPI0002953261	UniProt:M0SZR1	MapMan:19.4.2.9.3

Description

ATP-dependent Clp protease ATP-binding subunit, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G18820_001]

Coordinates

chr5:+:20324736..20328962

Molecular Weight (calculated)

24267.5 Da

IEP (calculated)

10.229

GRAVY (calculated)

-0.056

Length

225 amino acids

Sequence
(BLAST)

001: MAASTLSLLP IPTKIASSLL PPSNPRAVRL SSSLLAGSIS LAPPSLFRRP SLRFAAVVSL LPTAKPERAS AEKMPKWSSM AVRAFGMAEL EARKLKYPKT
101: GTEALLMGIL VEGTNEASKF LRAIGITLFK VREEAVKLLG KSDLFSFSPE HPPLTESAQR ALDWAVDEKL KSGEDGEITT AHMLLGIWSE KESAGYKILA
201: SLGFDDQKAS ELAKSANKDV VMNSR

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.