Factsheet for VIT_16s0022g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	49.12	80.58
GSMUA_Achr5P18820_001	Banana	plastid	61.4	62.22
Solyc03g007110.2.1	Tomato	plastid	60.53	58.72
KRH38715	Soybean	plastid	50.0	58.16
KRH38717	Soybean	nucleus, plastid	63.16	57.14
KRH09224	Soybean	nucleus, plastid	64.04	56.15
CDX92700	Canola	plastid	56.58	55.6
KRH09223	Soybean	plastid	60.53	54.76
Bra019170.1-P	Field mustard	plastid	55.7	54.04
CDY49708	Canola	plastid	55.7	54.04
AT4G25370.1	Thale cress	plastid	55.26	52.94
Os03t0247000-01	Rice	plastid	52.63	51.72
OQU92918	Sorghum	plastid	50.88	50.43
TraesCS4B01G224500.1	Wheat	plastid	50.0	49.78
TraesCS4D01G225100.1	Wheat	plastid	50.0	49.78
TraesCS4A01G079500.1	Wheat	plastid	49.56	49.34
Zm00001d028414_P002	Maize	plastid	50.88	47.35
CDX94453	Canola	plastid	26.75	46.92
HORVU4Hr1G063150.3	Barley	plastid	50.44	45.63
CDY57285	Canola	plastid	39.47	44.12
Zm00001d047920_P003	Maize	plastid	49.56	39.24

Protein Annotations

Gene3D:1.10.1780.10	EntrezGene:100261804	wikigene:100261804	MapMan:19.4.2.9.3	EMBL:AM446060	ProteinID:CAN60931
ProteinID:CAN60931.1	ProteinID:CCB49261	ProteinID:CCB49261.1	InterPro:Clp_N	InterPro:Clp_N_dom_sf	UniProt:F6HAK4
EMBL:FN595506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009941	GO:GO:0019538	InterPro:IPR036628	EntrezGene:LOC100261804	wikigene:LOC100261804	PFAM:PF02861
PANTHER:PTHR11638	PANTHER:PTHR11638:SF124	SUPFAM:SSF81923	UniParc:UPI0001984F3F	ArrayExpress:VIT_16s0022g01840	EnsemblPlantsGene:VIT_16s0022g01840
EnsemblPlants:VIT_16s0022g01840.t01	unigene:Vvi.3514	RefSeq:XP_002268037	RefSeq:XP_002268037.2	RefSeq:XP_019081824.1	:

Description

No Description!

Coordinates

chr16:+:14054411..14061513

Molecular Weight (calculated)

25012.0 Da

IEP (calculated)

7.803

GRAVY (calculated)

-0.205

Length

228 amino acids

Sequence
(BLAST)

001: MSTHSLSLLP ISCHRNPNDP ASPLLLSLHK NGLFSSLIGQ KLSIQSSHSR LVVSTRYRST VATVLLSLPT AKPERTSSEK VPKWSARAIK SFSMAELEAR
101: KLKYPNTGTE ALLMGILVEG TSLAAKFLRA NGITLFKVRE ETVNLLGKSD LYFFSPEHPP LTEPAQRALD WAVDEKIKSG EEGEITTSHL LLGIWAEEES
201: AGHKILATLG FNDDQAKELA KSETDLSF

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.