CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019170.1-P	Field mustard	plastid	100.0	100.0
CDX92700	Canola	plastid	91.06	92.24
CDY57285	Canola	plastid	68.51	78.92
AT4G25370.1	Thale cress	plastid	78.72	77.73
GSMUA_Achr11P...	Banana	cytosol	40.0	67.63
VIT_16s0022g01840.t01	Wine grape	plastid	54.04	55.7
KRH38715	Soybean	plastid	46.38	55.61
CDX94453	Canola	plastid	30.21	54.62
KRH09224	Soybean	nucleus, plastid	59.15	53.46
KRH38717	Soybean	nucleus, plastid	57.02	53.17
GSMUA_Achr5P18820_001	Banana	plastid	48.51	50.67
KRH09223	Soybean	plastid	54.04	50.4
OQU92918	Sorghum	plastid	47.66	48.7
Solyc03g007110.2.1	Tomato	plastid	48.51	48.51
Os03t0247000-01	Rice	plastid	45.11	45.69
TraesCS4B01G224500.1	Wheat	plastid	44.26	45.41
TraesCS4D01G225100.1	Wheat	plastid	44.26	45.41
TraesCS4A01G079500.1	Wheat	plastid	43.83	44.98
Zm00001d028414_P002	Maize	plastid	44.68	42.86
CDX86723	Canola	plastid	43.4	41.8
CDX94486	Canola	plastid	42.98	41.39
HORVU4Hr1G063150.3	Barley	plastid	44.26	41.27
Zm00001d047920_P003	Maize	plastid	44.26	36.11

Protein Annotations

EnsemblPlants:CDY49708	EnsemblPlantsGene:GSBRNA2T00093606001	Gene3D:1.10.1780.10	GO:A0A078IKV1	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	InterPro:Clp_N	InterPro:Clp_N_dom_sf	InterPro:IPR036628	PANTHER:PTHR11638	PANTHER:PTHR11638:SF124
PFAM:PF02861	ProteinID:CDY49708	ProteinID:CDY49708.1	SEG:seg	SUPFAM:SSF81923	UniParc:UPI00025410CF
UniProt:A0A078IKV1	MapMan:19.4.2.9.3	:	:	:	:

Description

BnaA03g47340DBnaA03g47340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKV1]

Coordinates

chrLK032854:+:19880..21897

Molecular Weight (calculated)

25687.0 Da

IEP (calculated)

10.232

GRAVY (calculated)

-0.260

Length

235 amino acids

Sequence
(BLAST)

001: MASSYTLSFI PMTVVVSRRS ASPSPSSSLI PPPSLLGKKL LVTQPSRRHF VSKKHRCLTS ASTVFSVPTA QPENGSSDKI PKWSARAIKS LAMGELEARK
101: LKYPTTGSEA ILMGILVEGT STAAKFLRAN GITLFKVRDE IIKLLGKSDM YFFSPEHPPL TEPARKAVDW AIDEKKKSGV DGELTTAYLL LGVWSQKDSA
201: GRQILEALGF NEDKAKQVAE AMNEDVDLSF KKQSQ

Best Arabidopsis Sequence Match ( AT4G25370.1 )
(BLAST)

001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

Arabidopsis Description

CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.