Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029436.1-P | Field mustard | plastid | 98.36 | 98.36 |
| CDX94486 | Canola | plastid | 86.89 | 86.89 |
| GSMUA_Achr11P... | Banana | cytosol | 37.7 | 66.19 |
| AT4G12060.1 | Thale cress | plastid | 64.75 | 65.56 |
| GSMUA_Achr5P18820_001 | Banana | plastid | 47.95 | 52.0 |
| KRH77428 | Soybean | endoplasmic reticulum, golgi | 50.82 | 48.63 |
| Os03t0247000-01 | Rice | plastid | 45.08 | 47.41 |
| OQU92918 | Sorghum | plastid | 44.26 | 46.96 |
| Solyc08g079660.2.1 | Tomato | plastid | 44.26 | 45.19 |
| TraesCS4A01G079500.1 | Wheat | plastid | 41.8 | 44.54 |
| TraesCS4D01G225100.1 | Wheat | plastid | 41.39 | 44.1 |
| Zm00001d028414_P002 | Maize | plastid | 43.85 | 43.67 |
| TraesCS4B01G224500.1 | Wheat | plastid | 40.98 | 43.67 |
| CDX92700 | Canola | plastid | 41.39 | 43.53 |
| CDY49708 | Canola | plastid | 41.8 | 43.4 |
| HORVU4Hr1G063150.3 | Barley | plastid | 41.39 | 40.08 |
| CDY57285 | Canola | plastid | 31.15 | 37.25 |
| CDX94453 | Canola | plastid | 18.85 | 35.38 |
| PGSC0003DMT400010010 | Potato | plastid | 45.9 | 35.22 |
| Zm00001d047920_P003 | Maize | plastid | 41.39 | 35.07 |
Protein Annotations
| EnsemblPlants:CDX86723 | EnsemblPlantsGene:GSBRNA2T00145424001 | Gene3D:1.10.1780.10 | GO:A0A078DHB2 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0019538 | InterPro:Clp_N | InterPro:Clp_N_dom_sf | InterPro:IPR036628 | PANTHER:PTHR11638 | PANTHER:PTHR11638:SF124 |
| PFAM:PF02861 | ProteinID:CDX86723 | ProteinID:CDX86723.1 | SEG:seg | SUPFAM:SSF81923 | UniParc:UPI0004EE8A7D |
| MapMan:19.4.2.9.3 | : | : | : | : | : |
Description
BnaA09g21130D
Coordinates
chrLK031847:+:152776..154088
Molecular Weight (calculated)
26757.9 Da
IEP (calculated)
9.613
GRAVY (calculated)
-0.255
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQSFTLAN LRISQIDSFY SQKPSSPIHF FSTRNPVKSL NLTNPWMAGD SSLSLDSSAS VLRTNSTTRR KIPIAVVASL PTANPESAVS DAKKPKWSWR
101: GIKSFAMGEL EARKLKYPNT GTESLLMGIL IEGTFFTSKF LRAHKITLYK VREETIKLLG KADLYSFSPE HPPLTHDAQR ALDSAVNQNL KAGGAGEIMP
201: AHILLGVWSE VESPGHKILA TLGFTDEKAK ELESFASESG FLDE
101: GIKSFAMGEL EARKLKYPNT GTESLLMGIL IEGTFFTSKF LRAHKITLYK VREETIKLLG KADLYSFSPE HPPLTHDAQR ALDSAVNQNL KAGGAGEIMP
201: AHILLGVWSE VESPGHKILA TLGFTDEKAK ELESFASESG FLDE
001: MAAHSSCNFA LTNPIISQID SFSKKKLSVP LYFFSTRKAL TNPWLGVVDS SLSLTSPVSA LQTNRPRRIH KSAISSLPTA NPDLVVSDAK KPKWSWRAIK
101: SFAMGELEAR KLKYPNTGTE ALLMGILIEG TSFTSKFLRA NKIMLYKVRE ETVKLLGKAD MYFFSPEHPP LTEDAQRALD SALDQNLKAG GIGEVMPAHI
201: LLGIWSEVES PGHKILATLG FTDEKSKELE SFASESGFLD E
101: SFAMGELEAR KLKYPNTGTE ALLMGILIEG TSFTSKFLRA NKIMLYKVRE ETVKLLGKAD MYFFSPEHPP LTEDAQRALD SALDQNLKAG GIGEVMPAHI
201: LLGIWSEVES PGHKILATLG FTDEKSKELE SFASESGFLD E
Arabidopsis Description
CLPT2ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GW78]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.