Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 37.69 | 35.25 |
| CDX92700 | Canola | plastid | 55.38 | 31.03 |
| CDY49708 | Canola | plastid | 54.62 | 30.21 |
| AT4G25370.1 | Thale cress | plastid | 53.08 | 28.99 |
| KRH38715 | Soybean | plastid | 43.08 | 28.57 |
| VIT_16s0022g01840.t01 | Wine grape | plastid | 46.92 | 26.75 |
| KRH09223 | Soybean | plastid | 46.92 | 24.21 |
| GSMUA_Achr5P18820_001 | Banana | plastid | 41.54 | 24.0 |
| KRH09224 | Soybean | nucleus, plastid | 47.69 | 23.85 |
| KRH38717 | Soybean | nucleus, plastid | 44.62 | 23.02 |
| Solyc03g007110.2.1 | Tomato | plastid | 40.77 | 22.55 |
| OQU92918 | Sorghum | plastid | 39.23 | 22.17 |
| Os03t0247000-01 | Rice | plastid | 39.23 | 21.98 |
| CDY57285 | Canola | plastid | 32.31 | 20.59 |
| TraesCS4B01G224500.1 | Wheat | plastid | 36.15 | 20.52 |
| TraesCS4D01G225100.1 | Wheat | plastid | 36.15 | 20.52 |
| Zm00001d028414_P002 | Maize | plastid | 38.46 | 20.41 |
| TraesCS4A01G079500.1 | Wheat | plastid | 35.38 | 20.09 |
| CDX86723 | Canola | plastid | 35.38 | 18.85 |
| HORVU4Hr1G063150.3 | Barley | plastid | 36.15 | 18.65 |
| CDX94486 | Canola | plastid | 34.62 | 18.44 |
| Zm00001d047920_P003 | Maize | plastid | 40.0 | 18.06 |
Protein Annotations
| EnsemblPlants:CDX94453 | EnsemblPlantsGene:GSBRNA2T00157622001 | Gene3D:1.10.1780.10 | GO:A0A078E4U4 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0019538 | InterPro:Clp_N_dom_sf | InterPro:IPR036628 | PANTHER:PTHR11638 | PANTHER:PTHR11638:SF124 | ProteinID:CDX94453 |
| ProteinID:CDX94453.1 | UniParc:UPI0004EDDC07 | MapMan:19.4.2.9.3 | : | : | : |
Description
BnaC01g17310D
Coordinates
chrLK031881:-:1341205..1342153
Molecular Weight (calculated)
13928.7 Da
IEP (calculated)
8.247
GRAVY (calculated)
-0.121
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MASCDTTIGP LLHRQARCLT SASTVFSVPT HGDVYLGAVP VPETFRGRVL HGDSTGTAWG RLENIAMSTT AAAKLLRGNG VTLFKVRDET INLLGKSDMY
101: FFSPEHPPLT EPAGKAIDWA VDEKKKSGVA
101: FFSPEHPPLT EPAGKAIDWA VDEKKKSGVA
001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ
Arabidopsis Description
CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.