Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G225100.1 | Wheat | plastid | 88.1 | 96.94 |
| TraesCS4A01G079500.1 | Wheat | plastid | 87.3 | 96.07 |
| TraesCS4B01G224500.1 | Wheat | plastid | 86.11 | 94.76 |
| OQU92918 | Sorghum | plastid | 73.81 | 80.87 |
| Os03t0247000-01 | Rice | plastid | 73.81 | 80.17 |
| Zm00001d028414_P002 | Maize | plastid | 71.43 | 73.47 |
| GSMUA_Achr11P... | Banana | cytosol | 38.1 | 69.06 |
| Zm00001d047920_P003 | Maize | plastid | 69.44 | 60.76 |
| GSMUA_Achr5P18820_001 | Banana | plastid | 48.41 | 54.22 |
| VIT_16s0022g01840.t01 | Wine grape | plastid | 45.63 | 50.44 |
| Solyc03g007110.2.1 | Tomato | plastid | 42.46 | 45.53 |
| Bra019170.1-P | Field mustard | plastid | 41.27 | 44.26 |
| CDY49708 | Canola | plastid | 41.27 | 44.26 |
| KRH38715 | Soybean | plastid | 33.73 | 43.37 |
| CDX92700 | Canola | plastid | 39.68 | 43.1 |
| KRH09223 | Soybean | plastid | 42.46 | 42.46 |
| KRH38717 | Soybean | nucleus, plastid | 42.06 | 42.06 |
| Bra029436.1-P | Field mustard | plastid | 40.48 | 41.8 |
| AT4G12060.1 | Thale cress | plastid | 39.68 | 41.49 |
| CDX94486 | Canola | plastid | 40.08 | 41.39 |
| CDX86723 | Canola | plastid | 40.08 | 41.39 |
| AT4G25370.1 | Thale cress | plastid | 38.49 | 40.76 |
| KRH09224 | Soybean | nucleus, plastid | 41.67 | 40.38 |
| Solyc08g079660.2.1 | Tomato | plastid | 37.7 | 39.75 |
| KRH77428 | Soybean | endoplasmic reticulum, golgi | 39.29 | 38.82 |
| CDX94453 | Canola | plastid | 18.65 | 36.15 |
| CDY57285 | Canola | plastid | 26.19 | 32.35 |
| PGSC0003DMT400010010 | Potato | plastid | 38.1 | 30.19 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G063150.3 | EnsemblPlantsGene:HORVU4Hr1G063150 | Gene3D:1.10.1780.10 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0019538 |
| InterPro:Clp_N | InterPro:Clp_N_dom_sf | InterPro:IPR036628 | PANTHER:PTHR11638 | PANTHER:PTHR11638:SF124 | PFAM:PF02861 |
| SEG:seg | SUPFAM:SSF81923 | UniParc:UPI000B482780 | UniProt:A0A287PCV5 | MapMan:19.4.2.9.3 | : |
Description
No Description!
Coordinates
chrchr4H:+:529286325..529293305
Molecular Weight (calculated)
26757.5 Da
IEP (calculated)
10.318
GRAVY (calculated)
-0.039
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: KLSSCSISSP IPQKPRKPPP AMATAAQVAA TFLSFLSCPR HHTAPSPSAS FLVTPVLPAS LRAAAAGGPT LTFGCRGRRV AVAVVAQLPT MIPELASGEK
101: KIRWSSRAVR SFAMAELEAR KMRYPTTGTE GLLMGILVEG TSDAAKLMRA NGITLLTVRD AAATILGKSE MFYFSPMHPP LTESAQRALD WAVNEKLKSG
201: EDGEVTANHL FLAIWSDKES AGHKVLASLG FDDQKASLLA KTAGEEKAMS PR
101: KIRWSSRAVR SFAMAELEAR KMRYPTTGTE GLLMGILVEG TSDAAKLMRA NGITLLTVRD AAATILGKSE MFYFSPMHPP LTESAQRALD WAVNEKLKSG
201: EDGEVTANHL FLAIWSDKES AGHKVLASLG FDDQKASLLA KTAGEEKAMS PR
001: MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ
101: ARKLKYPSTG TEAILMGILV EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK SDVDGELTTA YLLLGVWSQK
201: DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ
Arabidopsis Description
CLPT1ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93WL3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.