Skip to main content
crop-pal logo
Barley
Search for another protein from :
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • plastid 4
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G094480.1
HORVU3Hr1G038610.4
HORVU3Hr1G044510.1
HORVU3Hr1G044530.1
HORVU4Hr1G053660.1
HORVU4Hr1G063150.3
HORVU7Hr1G017670.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
ATCG00670.1 HORVU4Hr1G053660.1 AT1G02560.1 14593120
ATCG00670.1 HORVU7Hr1G017670.1 AT1G12410.1 14593120
ATCG00670.1 HORVU1Hr1G094480.1 AT1G49970.1 14593120
ATCG00670.1 HORVU3Hr1G044510.1 AT1G66670.1 14593120
ATCG00670.1 HORVU3Hr1G044530.1 AT1G66670.1 14593120
ATCG00670.1 HORVU4Hr1G063150.3 AT4G12060.1 14593120
ATCG00670.1 HORVU3Hr1G038610.4 AT4G17040.1 14593120
ATCG00670.1 HORVU4Hr1G063150.3 AT4G25370.1 14593120
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU0Hr1G026150.1 Barley cytosol, peroxisome, plastid 100.0 100.0
HORVU0Hr1G036940.1 Barley cytosol, peroxisome, plastid 100.0 100.0
HORVU0Hr1G037900.1 Barley cytosol, peroxisome, plastid 100.0 100.0
AGP50779 Barley cytosol, peroxisome, plastid 100.0 100.0
HORVU6Hr1G023010.1 Barley cytosol, peroxisome, plastid 100.0 100.0
HORVU6Hr1G037220.1 Barley cytosol, peroxisome, plastid 100.0 100.0
HORVU6Hr1G049380.1 Barley cytosol, peroxisome, plastid 100.0 100.0
HORVU3Hr1G053800.1 Barley endoplasmic reticulum 64.35 100.0
HORVU5Hr1G065060.1 Barley cytosol 98.61 98.61
HORVU0Hr1G027550.1 Barley cytosol 98.61 98.61
HORVU7Hr1G065830.1 Barley cytosol 98.61 98.61
HORVU3Hr1G044750.2 Barley cytosol 56.48 88.41
ATCG00670.1 Thale cress cytosol 61.11 67.35
PGSC0003DMT400055547 Potato cytosol 20.83 65.22
PGSC0003DMT400013567 Potato cytosol, endoplasmic reticulum, mitochondrion 29.63 60.95
Solyc01g007490.2.1 Tomato plastid 56.94 59.71
HORVU3Hr1G083440.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 13.43 37.66
Solyc09g065790.1.1 Tomato cytosol 30.09 36.93
HORVU3Hr1G044510.1 Barley extracellular 12.96 32.18
HORVU4Hr1G038160.2 Barley plastid 31.48 24.03
HORVU3Hr1G044530.1 Barley plastid 33.8 23.93
HORVU7Hr1G017670.1 Barley plastid 34.26 22.98
HORVU4Hr1G053660.1 Barley plastid 31.94 22.55
HORVU2Hr1G090470.1 Barley plastid 29.63 18.93
HORVU3Hr1G038610.4 Barley plastid 23.15 17.61
HORVU6Hr1G059510.8 Barley cytosol, peroxisome 30.56 15.24
HORVU4Hr1G046480.1 Barley plastid 22.69 13.17
HORVU1Hr1G094480.1 Barley plastid 23.15 11.79
Protein Annotations
MapMan:19.4.2.9.1Gene3D:3.90.226.10EntrezGene:4525074ProteinID:AGP50779.1ProteinID:AMA20270.1InterPro:ClpP
InterPro:ClpP/TepAInterPro:ClpP/crotonase-like_dom_sfInterPro:ClpP_His_ASInterPro:ClpP_Ser_ASGO:GO:0003674GO:GO:0003824
GO:GO:0004252GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008236GO:GO:0009507GO:GO:0009536
GO:GO:0009570GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:HORVU0Hr1G029900EnsemblPlants:HORVU0Hr1G029900.1HAMAP:MF_00444
PFAM:PF00574PRINTS:PR00127ScanProsite:PS00381ScanProsite:PS00382PANTHER:PTHR10381PANTHER:PTHR10381:SF19
UniProt:S4YYL1SUPFAM:SSF52096UniParc:UPI0000E8A89BRefSeq:YP_874677.1::
Description
ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:S4YYL1]
Coordinates
chrchrUn:-:165224593..165225243
Molecular Weight (calculated)
24712.0 Da
IEP (calculated)
4.494
GRAVY (calculated)
0.062
Length
216 amino acids
Sequence
(BLAST)
001: MPIGVPKVPY RIPGDEEATW VDLYNVMYRE RTLFLGQEIR CEITNHITGL MVYLSIEDGI SDIFLFINSP GGWLISGMAI FDTMQTVTPD IYTICLGIAA
101: SMASFILLGG EPAKRIAFPH ARIMLHQPAS AYYRARTPEF LLEVEELHKV REMITRVYAL RTGKPFWVVS EDMERDVFMS ADEAKAYGLV DIVGDEMIDK
201: HCDTDPVWFP EMFKDW
Best Arabidopsis Sequence Match ( ATCG00670.1 )
(BLAST)
001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ
Arabidopsis Description
CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.