Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G262000.1 | Wheat | plastid | 68.36 | 98.67 |
| TraesCS6D01G214700.1 | Wheat | plastid | 67.44 | 98.65 |
| TraesCS6A01G220500.1 | Wheat | plastid | 68.13 | 98.33 |
| Os02t0634500-01 | Rice | plastid | 58.66 | 85.23 |
| Zm00001d051203_P001 | Maize | plastid | 57.04 | 81.25 |
| Zm00001d017330_P001 | Maize | plastid | 52.66 | 80.85 |
| OQU85365 | Sorghum | plastid | 56.81 | 79.61 |
| GSMUA_AchrUn_... | Banana | cytosol | 32.33 | 68.97 |
| HORVU2Hr1G090470.1 | Barley | plastid | 50.58 | 64.79 |
| CDX69964 | Canola | plastid | 22.17 | 64.0 |
| Solyc04g009310.2.1 | Tomato | plastid | 34.41 | 63.14 |
| PGSC0003DMT400082481 | Potato | mitochondrion | 34.41 | 63.14 |
| VIT_01s0011g02100.t01 | Wine grape | mitochondrion | 35.1 | 63.07 |
| KRH29139 | Soybean | mitochondrion, nucleus | 34.64 | 63.03 |
| KRH24178 | Soybean | mitochondrion | 34.18 | 62.71 |
| CDY61915 | Canola | mitochondrion | 33.95 | 62.29 |
| Bra009331.1-P | Field mustard | mitochondrion | 33.49 | 60.92 |
| PGSC0003DMT400027435 | Potato | mitochondrion | 33.26 | 60.5 |
| CDY21523 | Canola | mitochondrion | 33.26 | 60.5 |
| Bra013020.1-P | Field mustard | mitochondrion | 32.56 | 60.0 |
| GSMUA_Achr5P10890_001 | Banana | plastid | 36.95 | 59.93 |
| AT5G23140.1 | Thale cress | mitochondrion, plastid | 33.26 | 59.75 |
| CDY02210 | Canola | mitochondrion | 32.33 | 59.57 |
| HORVU3Hr1G044510.1 | Barley | extracellular | 8.55 | 42.53 |
| HORVU3Hr1G083440.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 7.39 | 41.56 |
| HORVU4Hr1G053660.1 | Barley | plastid | 27.48 | 38.89 |
| HORVU3Hr1G053800.1 | Barley | endoplasmic reticulum | 10.85 | 33.81 |
| HORVU5Hr1G065060.1 | Barley | cytosol | 15.47 | 31.02 |
| HORVU0Hr1G027550.1 | Barley | cytosol | 15.47 | 31.02 |
| HORVU7Hr1G065830.1 | Barley | cytosol | 15.47 | 31.02 |
| HORVU0Hr1G036940.1 | Barley | cytosol, peroxisome, plastid | 15.24 | 30.56 |
| HORVU0Hr1G037900.1 | Barley | cytosol, peroxisome, plastid | 15.24 | 30.56 |
| HORVU0Hr1G029900.1 | Barley | cytosol, peroxisome, plastid | 15.24 | 30.56 |
| HORVU0Hr1G026150.1 | Barley | cytosol, peroxisome, plastid | 15.24 | 30.56 |
| HORVU6Hr1G049380.1 | Barley | cytosol, peroxisome, plastid | 15.24 | 30.56 |
| HORVU6Hr1G037220.1 | Barley | cytosol, peroxisome, plastid | 15.24 | 30.56 |
| HORVU6Hr1G023010.1 | Barley | cytosol, peroxisome, plastid | 15.24 | 30.56 |
| AGP50779 | Barley | cytosol, peroxisome, plastid | 15.24 | 30.56 |
| HORVU3Hr1G044530.1 | Barley | plastid | 20.55 | 29.18 |
| HORVU3Hr1G044750.2 | Barley | cytosol | 9.24 | 28.99 |
| HORVU3Hr1G038610.4 | Barley | plastid | 18.71 | 28.52 |
| HORVU4Hr1G038160.2 | Barley | plastid | 18.24 | 27.92 |
| HORVU7Hr1G017670.1 | Barley | plastid | 20.09 | 27.02 |
| HORVU4Hr1G046480.1 | Barley | plastid | 20.79 | 24.19 |
| HORVU1Hr1G094480.1 | Barley | plastid | 18.01 | 18.4 |
Protein Annotations
| Gene3D:3.90.226.10 | MapMan:35.1 | UniProt:A0A287UBM0 | InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf |
| InterPro:ClpP_His_AS | InterPro:ClpP_Ser_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008236 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU6Hr1G059510 | EnsemblPlants:HORVU6Hr1G059510.8 | HAMAP:MF_00444 | PFAM:PF00574 | PRINTS:PR00127 | ScanProsite:PS00381 |
| ScanProsite:PS00382 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF40 | SUPFAM:SSF52096 | UniParc:UPI000B48092E | SEG:seg |
Description
ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A287UBM0]
Coordinates
chrchr6H:-:393856368..393857894
Molecular Weight (calculated)
47038.3 Da
IEP (calculated)
8.746
GRAVY (calculated)
-0.388
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: LVNDYTCGCY EEHPNEINRK VENPATTLPL LWAAKFFRGK QAKGRTEKQQ DTAGRGTPSP HSTPYRREEK KGSDPPDRSA TTVSTSRLTP IRFLRFTLST
101: LTPFPFPFLG ISPPLLFPPH IRPQIPTPGP VAAMTTSAVA NLAGASPLPA FAPRPRSRPN SASPGPYGPA PRRLAVAAPP RAFFSSAPYQ PPEPEGYSSV
201: REYGLVPMVV ETTSRGERAY DIFSRLLKER IVCIHGPIAD ETASLVVAQL LFLESENPLK PISLYINSPG GVVTAGLAIY DTMQYIRCPV NTICIGQAAS
301: MGSLLLAAGA RGERRALPNA RVMIHQPSGG AQGQATDIAI QAKEILKLRD RLNKIYAKHT GQNIDKIEQC MERDLFMDPE EAREWGLIDE VIENRPASLM
401: PEGLSAVDPP HHGGGGGPNG RGRDRDMEEP SAV
101: LTPFPFPFLG ISPPLLFPPH IRPQIPTPGP VAAMTTSAVA NLAGASPLPA FAPRPRSRPN SASPGPYGPA PRRLAVAAPP RAFFSSAPYQ PPEPEGYSSV
201: REYGLVPMVV ETTSRGERAY DIFSRLLKER IVCIHGPIAD ETASLVVAQL LFLESENPLK PISLYINSPG GVVTAGLAIY DTMQYIRCPV NTICIGQAAS
301: MGSLLLAAGA RGERRALPNA RVMIHQPSGG AQGQATDIAI QAKEILKLRD RLNKIYAKHT GQNIDKIEQC MERDLFMDPE EAREWGLIDE VIENRPASLM
401: PEGLSAVDPP HHGGGGGPNG RGRDRDMEEP SAV
001: MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA
Arabidopsis Description
CLPP5ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WMF0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.