Factsheet for PGSC0003DMT400082481

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
golgi 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009310.2.1	Tomato	plastid	98.73	98.73
PGSC0003DMT400027435	Potato	mitochondrion	86.86	86.13
VIT_01s0011g02100.t01	Wine grape	mitochondrion	83.47	81.74
CDX69964	Canola	plastid	51.69	81.33
CDY61915	Canola	mitochondrion	80.51	80.51
Bra013020.1-P	Field mustard	mitochondrion	78.81	79.15
CDY02210	Canola	mitochondrion	78.81	79.15
KRH29139	Soybean	mitochondrion, nucleus	79.24	78.57
KRH24178	Soybean	mitochondrion	78.39	78.39
CDY21523	Canola	mitochondrion	78.81	78.15
AT5G23140.1	Thale cress	mitochondrion, plastid	79.66	78.01
Bra009331.1-P	Field mustard	mitochondrion	77.97	77.31
GSMUA_AchrUn_...	Banana	cytosol	56.78	66.01
Zm00001d025891_P001	Maize	mitochondrion	65.25	59.23
Zm00001d002969_P001	Maize	mitochondrion	64.83	59.07
GSMUA_Achr5P10890_001	Banana	plastid	59.75	52.81
TraesCS2B01G393400.1	Wheat	plastid	64.41	51.35
TraesCS2D01G372600.1	Wheat	plastid	65.25	51.33
KXG26753	Sorghum	plastid	64.83	51.0
Zm00001d017330_P001	Maize	plastid	60.59	50.71
TraesCS6A01G220500.1	Wheat	plastid	63.56	50.0
TraesCS6B01G262000.1	Wheat	plastid	63.14	49.67
PGSC0003DMT400055547	Potato	cytosol	14.41	49.28
TraesCS6D01G214700.1	Wheat	plastid	61.44	48.99
Os04t0525600-01	Rice	mitochondrion	63.98	48.87
Zm00001d051203_P001	Maize	plastid	61.44	47.7
Os02t0634500-01	Rice	plastid	60.17	47.65
OQU85365	Sorghum	plastid	61.44	46.93
HORVU2Hr1G090470.1	Barley	plastid	64.83	45.27
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	17.37	39.05
HORVU6Hr1G059510.8	Barley	cytosol, peroxisome	63.14	34.41
PGSC0003DMT400084282	Potato	plastid	33.9	29.09
PGSC0003DMT400078756	Potato	plastid	36.02	27.07
PGSC0003DMT400079259	Potato	plastid	33.47	26.42
PGSC0003DMT400067452	Potato	plastid	32.63	25.5
PGSC0003DMT400010090	Potato	cytosol, plastid	28.39	23.18
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	41.95	17.55
PGSC0003DMT400065220	Potato	plastid	25.0	15.01

Protein Annotations

EntrezGene:102596270	Gene3D:3.90.226.10	MapMan:35.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0016787	GO:GO:0019538
UniProt:M1D616	HAMAP:MF_00444	PFAM:PF00574	EnsemblPlantsGene:PGSC0003DMG400032562	PGSC:PGSC0003DMG400032562	EnsemblPlants:PGSC0003DMT400082481
PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF40	MEROPS:S14.A02
SUPFAM:SSF52096	UniParc:UPI0002969923	RefSeq:XP_006359306.1	SEG:seg	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400032562]

Coordinates

chr4:+:4899203..4903886

Molecular Weight (calculated)

26266.7 Da

IEP (calculated)

8.226

GRAVY (calculated)

-0.253

Length

236 amino acids

Sequence
(BLAST)

001: MRTQIVHKLW NRRINGTPLN SKRFYGLIPM VIEHSSRGER AYDIFSRLLK ERIICINGPI NDATSHVVVA QLLFLESENP SKPIHMYLNS PGGAVTAGLA
101: IYDTMQYIRS PINTICLGQA ASMGSLLLAA GAKGERRSLP NASIMIHQPS GGYSGQAKDL TIHTKQIVRV WDTLNDLYAK HTGQPLDIIQ KNMDRDYFMT
201: PEEAKEFGII DEVIDERPMA LVTDAIANET KEKGSS

Best Arabidopsis Sequence Match ( AT5G23140.1 )
(BLAST)

001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S

Arabidopsis Description

CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.