CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002969_P001	Maize	mitochondrion	83.33	96.53
Zm00001d025891_P001	Maize	mitochondrion	82.0	94.62
Os04t0525600-01	Rice	mitochondrion	86.67	84.14
TraesCS2B01G393400.1	Wheat	plastid	82.0	83.11
TraesCS2D01G372600.1	Wheat	plastid	82.0	82.0
GSMUA_AchrUn_...	Banana	cytosol	51.33	75.86
HORVU2Hr1G090470.1	Barley	plastid	80.33	71.3
CDX69964	Canola	plastid	35.33	70.67
OQU85365	Sorghum	plastid	71.67	69.58
CDY61915	Canola	mitochondrion	53.67	68.22
KRH29139	Soybean	mitochondrion, nucleus	53.0	66.81
VIT_01s0011g02100.t01	Wine grape	mitochondrion	53.33	66.39
AT5G23140.1	Thale cress	mitochondrion, plastid	53.33	66.39
Bra009331.1-P	Field mustard	mitochondrion	52.67	66.39
Bra013020.1-P	Field mustard	mitochondrion	52.0	66.38
KRH24178	Soybean	mitochondrion	52.0	66.1
CDY02210	Canola	mitochondrion	51.67	65.96
CDY21523	Canola	mitochondrion	52.0	65.55
PGSC0003DMT400082481	Potato	mitochondrion	51.0	64.83
Solyc04g009310.2.1	Tomato	plastid	51.0	64.83
PGSC0003DMT400027435	Potato	mitochondrion	50.0	63.03
GSMUA_Achr5P10890_001	Banana	plastid	55.0	61.8
EER92371	Sorghum	plastid	37.33	39.58
EER94414	Sorghum	plastid	31.33	32.53
EES00561	Sorghum	plastid	28.67	29.55
EES07709	Sorghum	plastid	26.67	28.99
EES00782	Sorghum	plastid	29.0	27.8
OQU92609	Sorghum	plastid	29.0	25.66
KXG19238	Sorghum	plastid	24.67	25.34
EES20050	Sorghum	plastid	23.0	17.78

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	UniProt:A0A1B6PM68	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0016787	GO:GO:0019538
ProteinID:KXG26752.1	EnsemblPlants:KXG26753	ProteinID:KXG26753	ProteinID:KXG26753.1	HAMAP:MF_00444	PFAM:PF00574
PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF40	EnsemblPlantsGene:SORBI_3006G153200
SUPFAM:SSF52096	UniParc:UPI0001C80540	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:51341507..51344330

Molecular Weight (calculated)

31913.3 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.130

Length

300 amino acids

Sequence
(BLAST)

001: MRPPGPTCLT LPPTSPQPRL IAAALAPKSN PLNPSAAAAM LRRLAAVAPR AFSSFSSSSS SPHAPPLAAS GYTPRREYGL VPMVIEHTSR GERAYDIFSR
101: LLKERIVCIH GPITDDTASL VVAQLLFLES ENPAKPVHLY INSPGGVVTA GLAIYDTMQY IRSPVTTLCI GQAASMASLL LAAGASGERR ALPNARVMIH
201: QPSGGASGQA SDIAIHAKEI LKVRDRLNKI YAKHTGQAID RIEQCMERDM FMDPEEAHDW GLIDEVIEHR PVSLVSDAVG SDSPNPGTGV NKGTDEPSSA

Best Arabidopsis Sequence Match ( AT5G23140.1 )
(BLAST)

001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S

Arabidopsis Description

CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.