CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 8
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24178	Soybean	mitochondrion	95.8	96.61
VIT_01s0011g02100.t01	Wine grape	mitochondrion	83.19	82.16
CDY61915	Canola	mitochondrion	78.57	79.24
PGSC0003DMT400082481	Potato	mitochondrion	78.57	79.24
Solyc04g009310.2.1	Tomato	plastid	77.73	78.39
CDY02210	Canola	mitochondrion	77.31	78.3
PGSC0003DMT400027435	Potato	mitochondrion	78.15	78.15
CDX69964	Canola	plastid	49.16	78.0
Bra013020.1-P	Field mustard	mitochondrion	76.89	77.87
AT5G23140.1	Thale cress	mitochondrion, plastid	78.15	77.18
Bra009331.1-P	Field mustard	mitochondrion	76.05	76.05
CDY21523	Canola	mitochondrion	75.21	75.21
GSMUA_AchrUn_...	Banana	cytosol	57.14	67.0
Zm00001d025891_P001	Maize	mitochondrion	67.65	61.92
Zm00001d002969_P001	Maize	mitochondrion	66.39	61.0
GSMUA_Achr5P10890_001	Banana	plastid	62.18	55.43
TraesCS2B01G393400.1	Wheat	plastid	66.39	53.38
TraesCS2D01G372600.1	Wheat	plastid	67.23	53.33
KXG26753	Sorghum	plastid	66.81	53.0
Zm00001d017330_P001	Maize	plastid	60.92	51.42
Os04t0525600-01	Rice	mitochondrion	66.39	51.13
TraesCS6A01G220500.1	Wheat	plastid	63.45	50.33
TraesCS6B01G262000.1	Wheat	plastid	63.03	50.0
TraesCS6D01G214700.1	Wheat	plastid	61.34	49.32
Zm00001d051203_P001	Maize	plastid	62.6	49.01
Os02t0634500-01	Rice	plastid	60.5	48.32
OQU85365	Sorghum	plastid	62.6	48.22
HORVU2Hr1G090470.1	Barley	plastid	66.81	47.04
KRH31786	Soybean	nucleus, plastid	44.96	35.31
HORVU6Hr1G059510.8	Barley	cytosol, peroxisome	63.03	34.64
KRH69210	Soybean	nucleus, plastid	44.96	34.41
KRH68271	Soybean	plastid	39.08	30.9
KRH01676	Soybean	plastid	37.82	27.95
KRH70450	Soybean	plastid	37.4	27.9
KRH29491	Soybean	plastid	31.93	27.84
KRH24490	Soybean	plastid	31.93	27.84
KRH57519	Soybean	plastid	34.03	26.64
KRH04225	Soybean	plastid	33.61	26.32
KRH39679	Soybean	nucleus, plastid	32.77	25.49
KRH76388	Soybean	nucleus, plastid	32.77	25.49
KRH57313	Soybean	endoplasmic reticulum, extracellular	31.09	23.72
KRG96809	Soybean	plastid	30.67	22.32
KRH68514	Soybean	plastid	30.25	22.22
KRH04045	Soybean	mitochondrion	30.25	20.99
KRH35674	Soybean	plastid	26.89	17.2
KRG91103	Soybean	plastid	26.47	16.94

Protein Annotations

EntrezGene:100782585	Gene3D:3.90.226.10	MapMan:35.1	EMBL:ACUP02006786	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	EnsemblPlantsGene:GLYMA_11G100300	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236
GO:GO:0016787	GO:GO:0019538	UniProt:I1LIS1	EnsemblPlants:KRH29139	ProteinID:KRH29139	ProteinID:KRH29139.1
HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381
PANTHER:PTHR10381:SF40	MEROPS:S14.001	SUPFAM:SSF52096	UniParc:UPI000233C830	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:7600686..7602300

Molecular Weight (calculated)

26049.4 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.189

Length

238 amino acids

Sequence
(BLAST)

001: MRGVVKAFAG NLLFHGRKTQ TQCIRSYSLI PMVIEHSSRG ERAYDIFSRL LKERIICING PISDDTAHVV VAQLLFLESE NPSKPINMYL NSPGGAVTAG
101: LAIYDTMQYI RSPVNTICMG QAASMGSLLL AAGAKGERRS LPNATIMIHQ PSGGYSGQAK DIAIHTKHIV RVWDSLNELY AKHTGQSVEV IQTNMDRDNF
201: MTPKEAKEFG LIDEVIDQRP MALVSDAVGN EGKDKGSN

Best Arabidopsis Sequence Match ( AT5G23140.1 )
(BLAST)

001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S

Arabidopsis Description

CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.