CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70450	Soybean	plastid	97.52	98.43
VIT_14s0006g01880.t01	Wine grape	plastid	71.74	72.19
AT1G66670.1	Thale cress	plastid	65.84	68.61
Solyc02g091280.2.1	Tomato	plastid	65.22	67.96
Bra004177.1-P	Field mustard	plastid	64.29	66.13
CDX96137	Canola	plastid	64.29	66.13
PGSC0003DMT400078756	Potato	plastid	64.29	65.92
CDY36212	Canola	plastid	63.35	65.18
HORVU3Hr1G044510.1	Barley	extracellular	17.08	63.22
Os01t0507900-01	Rice	plastid	60.25	61.78
HORVU3Hr1G044530.1	Barley	plastid	56.52	59.67
TraesCS3B01G229600.1	Wheat	plastid	56.21	58.96
TraesCS3A01G197900.1	Wheat	plastid	56.21	58.96
GSMUA_Achr4P13550_001	Banana	plastid	67.39	58.81
Zm00001d009339_P001	Maize	plastid	56.21	58.39
EES00782	Sorghum	plastid	55.9	57.51
KRH76388	Soybean	nucleus, plastid	37.89	39.87
KRH39679	Soybean	nucleus, plastid	37.89	39.87
KRH31786	Soybean	nucleus, plastid	36.02	38.28
KRH29139	Soybean	mitochondrion, nucleus	27.95	37.82
KRH24178	Soybean	mitochondrion	27.64	37.71
KRH69210	Soybean	nucleus, plastid	36.02	37.3
KRH68271	Soybean	plastid	31.06	33.22
KRH29491	Soybean	plastid	27.64	32.6
KRH24490	Soybean	plastid	27.02	31.87
KRH04225	Soybean	plastid	24.22	25.66
KRH57519	Soybean	plastid	23.6	25.0
KRH57313	Soybean	endoplasmic reticulum, extracellular	23.29	24.04
KRH04045	Soybean	mitochondrion	23.29	21.87
KRH68514	Soybean	plastid	20.81	20.68
KRG96809	Soybean	plastid	20.5	20.18
KRG91103	Soybean	plastid	22.05	19.09
KRH35674	Soybean	plastid	21.74	18.82

Protein Annotations

EntrezGene:100795295	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EMBL:ACUP02011524	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	EnsemblPlantsGene:GLYMA_18G291900	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236
GO:GO:0016787	GO:GO:0019538	UniProt:I1N579	EnsemblPlants:KRH01676	ProteinID:KRH01676	ProteinID:KRH01676.1
HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381
PANTHER:PTHR10381:SF20	MEROPS:S14.A03	SUPFAM:SSF52096	UniParc:UPI000233F29A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:57051780..57054618

Molecular Weight (calculated)

35173.4 Da

IEP (calculated)

9.375

GRAVY (calculated)

-0.333

Length

322 amino acids

Sequence
(BLAST)

001: MEVSLSSTSC IPLSSKLKHK HGLFHSQIPI PTASTKTRRT KPLSIVNASR QTLSSNWLVS PHDFSASTAS PWLPRFEELD ATNMLLRQRI IFLGSQVDDM
101: TADFIISQLL FLDAEDSKKD IKLFINSPGG SVTAGMGIYD AMKLCKADVS TVCLGLAASM GAFILASGTK GKRYCMPNSR VMIHQPLGTA GGKATEMSIR
201: IREMAYHKIK INKILSRITG KPEEQIELDT DRDNFMNPWE AKEYGLVDGV IDDGKPGLVA PIGDASPPPK TRVWDQWKIE GSRKAKKNLP SEHKFLQNAS
301: KGSQGSDGDK GTVQEGETPV AV

Best Arabidopsis Sequence Match ( AT1G66670.1 )
(BLAST)

001: MEMSLRLASS STSNPICLLN PGKNLNFPIR NHRIPKTSKP FCVRSSMSLS KPPRQTLSSN WDVSSFSIDS VAQSPSRLPS FEELDTTNML LRQRIVFLGS
101: QVDDMTADLV ISQLLLLDAE DSERDITLFI NSPGGSITAG MGIYDAMKQC KADVSTVCLG LAASMGAFLL ASGSKGKRYC MPNSKVMIHQ PLGTAGGKAT
201: EMSIRIREMM YHKIKLNKIF SRITGKPESE IESDTDRDNF LNPWEAKEYG LIDAVIDDGK PGLIAPIGDG TPPPKTKVWD LWKVEGTKKD NTNLPSERSM
301: TQNGYAAIE

Arabidopsis Description

CLPP3ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.