CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39679	Soybean	nucleus, plastid	96.08	96.08
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	60.13	83.64
VIT_12s0028g01250.t01	Wine grape	plastid	70.59	74.23
CDY39425	Canola	plastid	68.3	72.57
CDY38981	Canola	plastid	68.95	72.51
AT5G45390.1	Thale cress	plastid	68.95	72.26
Bra025079.1-P	Field mustard	plastid	67.97	72.22
PGSC0003DMT400079259	Potato	plastid	65.03	66.56
Solyc08g075750.2.1	Tomato	plastid	63.73	64.57
EER94414	Sorghum	plastid	58.5	61.94
Os10t0580800-01	Rice	plastid	59.15	61.77
TraesCS1B01G213300.1	Wheat	plastid	57.19	59.12
TraesCS1D01G202100.1	Wheat	plastid	56.54	58.45
TraesCS1A01G198400.1	Wheat	plastid	56.21	58.11
Zm00001d030149_P001	Maize	mitochondrion	58.17	55.97
KRH70450	Soybean	plastid	39.54	37.93
KRH01676	Soybean	plastid	39.87	37.89
KRH24178	Soybean	mitochondrion	26.14	33.9
KRH29139	Soybean	mitochondrion, nucleus	25.49	32.77
KRH31786	Soybean	nucleus, plastid	32.03	32.34
KRH69210	Soybean	nucleus, plastid	32.03	31.51
KRH29491	Soybean	plastid	27.12	30.4
KRH24490	Soybean	plastid	26.47	29.67
KRH68271	Soybean	plastid	27.12	27.57
KRH57519	Soybean	plastid	25.82	25.99
KRH04225	Soybean	plastid	25.82	25.99
KRH68514	Soybean	plastid	25.49	24.07
KRH57313	Soybean	endoplasmic reticulum, extracellular	24.18	23.72
KRG96809	Soybean	plastid	25.16	23.55
KRH04045	Soybean	mitochondrion	24.51	21.87
KRG91103	Soybean	plastid	23.53	19.35
KRH35674	Soybean	plastid	23.2	19.09

Protein Annotations

EntrezGene:100812280	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EMBL:ACUP02000609	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	EnsemblPlantsGene:GLYMA_01G149700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:I1J836
EnsemblPlants:KRH76388	ProteinID:KRH76388	ProteinID:KRH76388.1	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127
ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF24	MEROPS:S14.010	SUPFAM:SSF52096	UniParc:UPI00023378DA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:48690563..48696092

Molecular Weight (calculated)

33105.8 Da

IEP (calculated)

6.965

GRAVY (calculated)

-0.111

Length

306 amino acids

Sequence
(BLAST)

001: MDLLSISPSH PLPSSIRTLS SNPKSPISSS FFTPKPHSRF SKPSKTPARC VFTASPIPSK IPNFGSQSRN PGLTFELSAP QTPSTAARGA EGDVMGLLLR
101: ERIVFLGSSI DDFVADAIMS QLLLLDALDP TKDIRLFINS TGGSLSATMA IYDAVQLVRA DVSTVALGIA ASTASVILGG GTKGKRFAMP NTRIMVHQPL
201: GGASGQAIDV EIQAKEVMHN KNNITRIISS FTGRSFEQVQ KDIDRDKYMS PIEAVEYGII DGVIDRDSII PLMPVPERVK STLNYEEISK DPRKFLTPDI
301: PDDEIY

Best Arabidopsis Sequence Match ( AT5G45390.1 )
(BLAST)

001: MGTLSLSSSL KPSLVSSRLN SSSSASSSSF PKPNNLYLKP TKLISPPLRT TSPSPLRFAN ASIEMSQTQE SAIRGAESDV MGLLLRERIV FLGSSIDDFV
101: ADAIMSQLLL LDAKDPKKDI KLFINSPGGS LSATMAIYDV VQLVRADVST IALGIAASTA SIILGAGTKG KRFAMPNTRI MIHQPLGGAS GQAIDVEIQA
201: KEVMHNKNNV TSIIAGCTSR SFEQVLKDID RDRYMSPIEA VEYGLIDGVI DGDSIIPLEP VPDRVKPRVN YEEISKDPMK FLTPEIPDDE IY

Arabidopsis Description

CLPP4ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94B60]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.