Factsheet for Zm00001d030149_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94414	Sorghum	plastid	88.68	97.58
Os10t0580800-01	Rice	plastid	77.67	84.3
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	54.09	78.18
TraesCS1A01G198400.1	Wheat	plastid	72.64	78.04
TraesCS1D01G202100.1	Wheat	plastid	72.33	77.7
TraesCS1B01G213300.1	Wheat	plastid	72.33	77.7
CDY38981	Canola	plastid	57.23	62.54
Bra025079.1-P	Field mustard	plastid	56.6	62.5
CDY39425	Canola	plastid	56.6	62.5
AT5G45390.1	Thale cress	plastid	56.92	61.99
VIT_12s0028g01250.t01	Wine grape	plastid	55.97	61.17
KRH39679	Soybean	nucleus, plastid	56.29	58.5
KRH76388	Soybean	nucleus, plastid	55.97	58.17
PGSC0003DMT400079259	Potato	plastid	54.4	57.86
Solyc08g075750.2.1	Tomato	plastid	53.46	56.29
Zm00001d047634_P002	Maize	cytosol	28.93	38.98
Zm00001d002969_P001	Maize	mitochondrion	28.93	35.52
Zm00001d025891_P001	Maize	mitochondrion	28.62	35.0
GRMZM5G804708_P01	Maize	plastid	23.27	34.26
Zm00001d028895_P001	Maize	plastid	31.45	31.95
Zm00001d017330_P001	Maize	plastid	27.99	31.56
Zm00001d009339_P001	Maize	plastid	30.5	31.29
Zm00001d051203_P001	Maize	plastid	28.93	30.26
Zm00001d040322_P002	Maize	plastid	22.01	24.22
Zm00001d045430_P002	Maize	plastid	22.01	21.6
Zm00001d029121_P005	Maize	plastid	21.7	20.35
Zm00001d039167_P001	Maize	plastid	20.75	17.01

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	UniProt:A0A1D6KA96	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009507	GO:GO:0009532	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009658	GO:GO:0009840	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016787	GO:GO:0019538	GO:GO:0048510	HAMAP:MF_00444	ProteinID:ONM00399.1	PFAM:PF00574
PRINTS:PR00127	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF24	SUPFAM:SSF52096	UniParc:UPI0008432AA0
EnsemblPlantsGene:Zm00001d030149	EnsemblPlants:Zm00001d030149_P001	EnsemblPlants:Zm00001d030149_T001	SEG:seg	:	:

Description

ATP-dependent Clp protease proteolytic subunit

Coordinates

chr1:-:108717575..108726921

Molecular Weight (calculated)

33922.6 Da

IEP (calculated)

5.487

GRAVY (calculated)

-0.140

Length

318 amino acids

Sequence
(BLAST)

001: MSTNPTAPKS GERRRCSCRR HQSSPPRSDM ATGSASAIAS FSVAAAAAAA LRVRRPCARA CAWAPSQRPQ QGALVSLKPC ASLAPQAPLW RAESDAAGGG
101: AGAGDVMGLL LRERIVFLGN EIEDFLADAV VSQLLLLDAI DPDSDIRLFV NSPGGSLSAT MAIYDVMQLV RADVSTIGMG IAGSTASIIL GGGTKGKRFA
201: MPNTRIMIHQ PVGGASGQAL DVEVQAKEIL TNKRNVIRIV SGFTGRTPEQ VEKDIDRDRY MGPLEAVDYG LIDGVIDGDS IIPLEPVPER VKPKYNYEEL
301: YKDPQKFLTP DVPDDEIY

Best Arabidopsis Sequence Match ( AT5G45390.1 )
(BLAST)

001: MGTLSLSSSL KPSLVSSRLN SSSSASSSSF PKPNNLYLKP TKLISPPLRT TSPSPLRFAN ASIEMSQTQE SAIRGAESDV MGLLLRERIV FLGSSIDDFV
101: ADAIMSQLLL LDAKDPKKDI KLFINSPGGS LSATMAIYDV VQLVRADVST IALGIAASTA SIILGAGTKG KRFAMPNTRI MIHQPLGGAS GQAIDVEIQA
201: KEVMHNKNNV TSIIAGCTSR SFEQVLKDID RDRYMSPIEA VEYGLIDGVI DGDSIIPLEP VPDRVKPRVN YEEISKDPMK FLTPEIPDDE IY

Arabidopsis Description

CLPP4ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94B60]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.