CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030149_P001	Maize	mitochondrion	97.58	88.68
Os10t0580800-01	Rice	plastid	86.51	85.32
TraesCS1B01G213300.1	Wheat	plastid	80.97	79.05
TraesCS1A01G198400.1	Wheat	plastid	80.97	79.05
TraesCS1D01G202100.1	Wheat	plastid	80.62	78.72
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	59.52	78.18
CDY38981	Canola	plastid	62.63	62.2
Bra025079.1-P	Field mustard	plastid	61.94	62.15
CDY39425	Canola	plastid	61.94	62.15
AT5G45390.1	Thale cress	plastid	62.28	61.64
VIT_12s0028g01250.t01	Wine grape	plastid	61.94	61.51
KRH39679	Soybean	nucleus, plastid	62.28	58.82
KRH76388	Soybean	nucleus, plastid	61.94	58.5
PGSC0003DMT400079259	Potato	plastid	60.21	58.19
Solyc08g075750.2.1	Tomato	plastid	59.52	56.95
EER92371	Sorghum	plastid	35.29	36.04
EES00782	Sorghum	plastid	34.26	31.63
KXG26753	Sorghum	plastid	32.53	31.33
EES07709	Sorghum	plastid	29.41	30.8
OQU85365	Sorghum	plastid	32.18	30.1
KXG19238	Sorghum	plastid	24.57	24.32
EES00561	Sorghum	plastid	23.88	23.71
OQU92609	Sorghum	plastid	24.22	20.65
EES20050	Sorghum	plastid	22.84	17.01

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EntrezGene:8055115	UniProt:C5WQL6	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	EnsemblPlants:EER94414	ProteinID:EER94414	ProteinID:EER94414.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532	GO:GO:0009535
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009840	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0048510
HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF24
EnsemblPlantsGene:SORBI_3001G281500	SUPFAM:SSF52096	unigene:Sbi.14598	UniParc:UPI0001A82DE1	RefSeq:XP_002467416.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:55220749..55224072

Molecular Weight (calculated)

30670.9 Da

IEP (calculated)

4.781

GRAVY (calculated)

0.015

Length

289 amino acids

Sequence
(BLAST)

001: MAAGSASATA SLSVAAAAAA ALRVRRPCAR ARAWAPSQRP QQGALLSLKP CASLAPHAPL WRAESDAAGG GAGAGDVMGL LLRERIVFLG NEIEDFLADA
101: VVSQLLLLDA IDPDSDIRLF VNSPGGSLSA TMAIYDVMQL VRADVSTIGM GIAGSTASII LGGGTKGKRF AMPNTRIMIH QPVGGASGQA LDVEVQAKEI
201: LTNKRNVIRI VSGFTGRTLE QVEKDIDRDR YMGPLEAVDY GLIDGVIDGD SIIPLEPVPE RVKPKYNYEE LYKDPQKFLT PDVPDDEIY

Best Arabidopsis Sequence Match ( AT5G45390.1 )
(BLAST)

001: MGTLSLSSSL KPSLVSSRLN SSSSASSSSF PKPNNLYLKP TKLISPPLRT TSPSPLRFAN ASIEMSQTQE SAIRGAESDV MGLLLRERIV FLGSSIDDFV
101: ADAIMSQLLL LDAKDPKKDI KLFINSPGGS LSATMAIYDV VQLVRADVST IALGIAASTA SIILGAGTKG KRFAMPNTRI MIHQPLGGAS GQAIDVEIQA
201: KEVMHNKNNV TSIIAGCTSR SFEQVLKDID RDRYMSPIEA VEYGLIDGVI DGDSIIPLEP VPDRVKPRVN YEEISKDPMK FLTPEIPDDE IY

Arabidopsis Description

CLPP4ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94B60]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.