Factsheet for PGSC0003DMT400079259

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075750.2.1	Tomato	plastid	95.99	95.03
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	58.86	80.0
VIT_12s0028g01250.t01	Wine grape	plastid	67.56	69.42
AT5G45390.1	Thale cress	plastid	64.88	66.44
CDY38981	Canola	plastid	64.55	66.32
Bra025079.1-P	Field mustard	plastid	63.88	66.32
CDY39425	Canola	plastid	63.88	66.32
KRH76388	Soybean	nucleus, plastid	66.56	65.03
KRH39679	Soybean	nucleus, plastid	65.89	64.38
EER94414	Sorghum	plastid	58.19	60.21
TraesCS1B01G213300.1	Wheat	plastid	59.53	60.14
TraesCS1D01G202100.1	Wheat	plastid	59.2	59.8
TraesCS1A01G198400.1	Wheat	plastid	58.53	59.12
Os10t0580800-01	Rice	plastid	57.19	58.36
Zm00001d030149_P001	Maize	mitochondrion	57.86	54.4
PGSC0003DMT400055547	Potato	cytosol	9.7	42.03
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	13.04	37.14
PGSC0003DMT400082481	Potato	mitochondrion	26.42	33.47
PGSC0003DMT400078756	Potato	plastid	35.12	33.44
PGSC0003DMT400027435	Potato	mitochondrion	26.09	32.77
PGSC0003DMT400084282	Potato	plastid	28.76	31.27
PGSC0003DMT400010090	Potato	cytosol, plastid	26.42	27.34
PGSC0003DMT400067452	Potato	plastid	24.41	24.17
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	32.78	17.38
PGSC0003DMT400065220	Potato	plastid	22.74	17.3

Protein Annotations

EntrezGene:102605723	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:M1D1J1	HAMAP:MF_00444	PFAM:PF00574
EnsemblPlantsGene:PGSC0003DMG400030851	PGSC:PGSC0003DMG400030851	EnsemblPlants:PGSC0003DMT400079259	PRINTS:PR00127	ScanProsite:PS00382	PANTHER:PTHR10381
PANTHER:PTHR10381:SF24	MEROPS:S14.010	SUPFAM:SSF52096	UniParc:UPI00029556A2	RefSeq:XP_006364458.1	RefSeq:XP_015159438.1
SEG:seg	:	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400030851]

Coordinates

chr8:+:48085138..48093979

Molecular Weight (calculated)

32550.3 Da

IEP (calculated)

5.374

GRAVY (calculated)

-0.055

Length

299 amino acids

Sequence
(BLAST)

001: MESLTLSTSL SPHCSSFNLR HTSLPKLSPT FSPYPSRKTP LSLKSSLTSH QPTSKTLSDS ADDKLSLLLA SAPQSPGMAM RGAEGDAMGL LLRERIIFLG
101: SSIDDFFADA IISQLLLLDA LDSTKDIRLF INCPGGSLSA TMAIFDVVQL VRADVSTVAL GISASTASII LAGGTKGKRY AMPNTRIMIH QPLGGASGQA
201: IDVEIQAREI MHNKDNVIKI FSNCTGRSYE QVQKDIDRDR YMSPIEAVEF GLIDGVIDRD SIIPLMPVPE RVKPTLKNQE MIQDPLKFLN PDIPDDEIY

Best Arabidopsis Sequence Match ( AT5G45390.1 )
(BLAST)

001: MGTLSLSSSL KPSLVSSRLN SSSSASSSSF PKPNNLYLKP TKLISPPLRT TSPSPLRFAN ASIEMSQTQE SAIRGAESDV MGLLLRERIV FLGSSIDDFV
101: ADAIMSQLLL LDAKDPKKDI KLFINSPGGS LSATMAIYDV VQLVRADVST IALGIAASTA SIILGAGTKG KRFAMPNTRI MIHQPLGGAS GQAIDVEIQA
201: KEVMHNKNNV TSIIAGCTSR SFEQVLKDID RDRYMSPIEA VEYGLIDGVI DGDSIIPLEP VPDRVKPRVN YEEISKDPMK FLTPEIPDDE IY

Arabidopsis Description

CLPP4ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94B60]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.