Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
- endoplasmic reticulum 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00670.1 | PGSC0003DMT400007157 | AT1G02560.1 | 14593120 |
| ATCG00670.1 | PGSC0003DMT400010090 | AT1G12410.1 | 14593120 |
| ATCG00670.1 | PGSC0003DMT400065220 | AT1G49970.1 | 14593120 |
| ATCG00670.1 | PGSC0003DMT400078756 | AT1G66670.1 | 14593120 |
| ATCG00670.1 | PGSC0003DMT400010010 | AT4G12060.1 | 14593120 |
| ATCG00670.1 | PGSC0003DMT400067452 | AT4G17040.1 | 14593120 |
| ATCG00670.1 | PGSC0003DMT400079259 | AT5G45390.1 | 14593120 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055547 | Potato | cytosol | 65.71 | 100.0 |
| TraesCS1A01G111400.1 | Wheat | cytosol | 51.43 | 47.37 |
| Solyc01g007490.2.1 | Tomato | plastid | 89.52 | 45.63 |
| HORVU3Hr1G044750.2 | Barley | cytosol | 56.19 | 42.75 |
| ATCG00670.1 | Thale cress | cytosol | 70.48 | 37.76 |
| HORVU0Hr1G027550.1 | Barley | cytosol | 62.86 | 30.56 |
| HORVU5Hr1G065060.1 | Barley | cytosol | 62.86 | 30.56 |
| HORVU7Hr1G065830.1 | Barley | cytosol | 62.86 | 30.56 |
| TraesCS2D01G271200.1 | Wheat | cytosol | 57.14 | 30.3 |
| GRMZM5G804708_P01 | Maize | plastid | 61.9 | 30.09 |
| TraesCS3B01G187300.1 | Wheat | cytosol | 61.9 | 30.09 |
| TraesCS3D01G053300.1 | Wheat | cytosol | 61.9 | 30.09 |
| HORVU0Hr1G029900.1 | Barley | cytosol, peroxisome, plastid | 60.95 | 29.63 |
| HORVU6Hr1G049380.1 | Barley | cytosol, peroxisome, plastid | 60.95 | 29.63 |
| HORVU6Hr1G037220.1 | Barley | cytosol, peroxisome, plastid | 60.95 | 29.63 |
| HORVU6Hr1G023010.1 | Barley | cytosol, peroxisome, plastid | 60.95 | 29.63 |
| AGP50779 | Barley | cytosol, peroxisome, plastid | 60.95 | 29.63 |
| HORVU0Hr1G026150.1 | Barley | cytosol, peroxisome, plastid | 60.95 | 29.63 |
| HORVU0Hr1G037900.1 | Barley | cytosol, peroxisome, plastid | 60.95 | 29.63 |
| HORVU0Hr1G036940.1 | Barley | cytosol, peroxisome, plastid | 60.95 | 29.63 |
| TraesCS1D01G435100.1 | Wheat | cytosol | 60.0 | 29.17 |
| CAA33972 | Rice | cytosol | 60.0 | 29.17 |
| TraesCS5D01G009400.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plastid | 54.29 | 28.36 |
| TraesCSU01G266900.1 | Wheat | cytosol | 44.76 | 25.97 |
| TraesCS1D01G182500.1 | Wheat | cytosol, peroxisome, plastid | 43.81 | 25.41 |
| HORVU3Hr1G053800.1 | Barley | endoplasmic reticulum | 31.43 | 23.74 |
| PGSC0003DMT400027435 | Potato | mitochondrion | 40.95 | 18.07 |
| TraesCS3A01G215600.1 | Wheat | cytosol | 31.43 | 17.93 |
| PGSC0003DMT400082481 | Potato | mitochondrion | 39.05 | 17.37 |
| PGSC0003DMT400010090 | Potato | cytosol, plastid | 42.86 | 15.57 |
| PGSC0003DMT400084282 | Potato | plastid | 37.14 | 14.18 |
| PGSC0003DMT400078756 | Potato | plastid | 40.95 | 13.69 |
| PGSC0003DMT400079259 | Potato | plastid | 37.14 | 13.04 |
| PGSC0003DMT400067452 | Potato | plastid | 31.43 | 10.93 |
| PGSC0003DMT400007157 | Potato | endoplasmic reticulum, plasma membrane | 38.1 | 7.09 |
| PGSC0003DMT400065220 | Potato | plastid | 24.76 | 6.62 |
Protein Annotations
| Gene3D:3.90.226.10 | MapMan:35.1 | EntrezGene:4099934 | wikigene:4099934 | ProteinID:ABD47081 | ProteinID:ABD47081.1 |
| ProteinID:AEB72164 | ProteinID:AEB72164.1 | ProteinID:AEB72250 | ProteinID:AEB72250.1 | InterPro:ClpP | InterPro:ClpP/TepA |
| InterPro:ClpP/crotonase-like_dom_sf | InterPro:ClpP_Ser_AS | EMBL:DQ231562 | EMBL:DQ386163 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004252 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008236 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | EMBL:JF772170 |
| EMBL:JF772171 | UniProt:M1A306 | PFAM:PF00574 | EnsemblPlantsGene:PGSC0003DMG401005300 | PGSC:PGSC0003DMG401005300 | EnsemblPlants:PGSC0003DMT400013567 |
| PRINTS:PR00127 | ScanProsite:PS00381 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF19 | MEROPS:S14.002 | SUPFAM:SSF52096 |
| TMHMM:TMhelix | UniParc:UPI0002969F55 | EntrezGene:clpP | wikigene:clpP | : | : |
Description
ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401005300]
Coordinates
chr1:-:50920926..50921243
Molecular Weight (calculated)
11881.6 Da
IEP (calculated)
7.512
GRAVY (calculated)
0.238
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: NFTLINRLYR ERLLFLGQGI STDLSNQLIG LMMYLSMEDE NKELYLFVNS PGGWVIPGIA IYDTMQFVRP DIHTICIGLA ASMGSFILAG GQLTKRIAFP
101: HAWRQ
101: HAWRQ
001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ
Arabidopsis Description
CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.