CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0271400-00
Os01t0507900-01
Os03t0247000-01
Os03t0308100-01
Os05t0592100-01
Os06t0136800-01
Os10t0580800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00670.1	Os03t0308100-01	AT1G02560.1	14593120
ATCG00670.1	Os06t0136800-01	AT1G12410.1	14593120
ATCG00670.1	Os05t0592100-01	AT1G49970.1	14593120
ATCG00670.1	Os01t0507900-01	AT1G66670.1	14593120
ATCG00670.1	Os03t0247000-01	AT4G12060.1	14593120
ATCG00670.1	Os01t0271400-00	AT4G17040.1	14593120
ATCG00670.1	Os03t0247000-01	AT4G25370.1	14593120
ATCG00670.1	Os10t0580800-01	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G804708_P01	Maize	plastid	96.76	96.76
HORVU0Hr1G027550.1	Barley	cytosol	95.83	95.83
HORVU7Hr1G065830.1	Barley	cytosol	95.83	95.83
HORVU5Hr1G065060.1	Barley	cytosol	95.83	95.83
HORVU3Hr1G053800.1	Barley	endoplasmic reticulum	61.57	95.68
TraesCSU01G266900.1	Wheat	cytosol	80.09	95.58
TraesCS3B01G187300.1	Wheat	cytosol	95.37	95.37
TraesCS1D01G182500.1	Wheat	cytosol, peroxisome, plastid	78.7	93.92
TraesCS1A01G111400.1	Wheat	cytosol	49.07	92.98
HORVU3Hr1G044750.2	Barley	cytosol	54.63	85.51
ATCG00670.1	Thale cress	cytosol	59.72	65.82
PGSC0003DMT400055547	Potato	cytosol	20.37	63.77
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	29.17	60.0
Solyc01g007490.2.1	Tomato	plastid	56.48	59.22
Solyc09g065790.1.1	Tomato	cytosol	30.09	36.93
Os03t0411500-01	Rice	plastid	30.56	25.48
Os10t0580800-01	Rice	plastid	33.8	24.91
Os06t0136800-01	Rice	plastid	33.8	24.58
Os03t0308100-01	Rice	plastid	31.48	24.11
Os01t0507900-01	Rice	plastid	33.33	22.93
Os02t0634500-01	Rice	plastid	29.17	21.14
Os04t0525600-01	Rice	mitochondrion	28.24	19.74
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	23.61	17.11
Os03t0344900-00	Rice	plastid	23.61	14.96
Os05t0592100-01	Rice	plastid	22.69	12.69

Protein Annotations

Gene3D:3.90.226.10	MapMan:50.3.4	EnsemblPlants:CAA33972	EnsemblPlantsGene:CAA33972	ProteinID:CAA33972	ProteinID:CAA33972.1
InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0009507
GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009840
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538
HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381
PANTHER:PTHR10381:SF19	MEROPS:S14.002	SUPFAM:SSF52096	UniParc:UPI0000127B4B	:	:

Description

No Description!

Coordinates

chrPt:-:67638..68288

Molecular Weight (calculated)

24715.9 Da

IEP (calculated)

4.431

GRAVY (calculated)

-0.017

Length

216 amino acids

Sequence
(BLAST)

001: MPIGVPKVPY RIPGDEEATW VDLYNVMYRE RTLFLGQEIR CEVTNHITGL MVYLSIEDGS SDIFLFINSP GGWLISGMAI FDTMQTVTPN IYTTCLGIAA
101: SMPSFILLGG EPTKRIAFPH ARIMLHQPAS AYYRARTPEF LLEVEELHKV REMITRVYAL RTGKPFWVVS EDMERDVFMS ADEAKAYGLV DIVGDEMLDE
201: HCDTDPVWFP EMFKDW

Best Arabidopsis Sequence Match ( ATCG00670.1 )
(BLAST)

001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ

Arabidopsis Description

CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.