Factsheet for Os05t0592100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES20050	Sorghum	plastid	91.97	91.49
Zm00001d039167_P001	Maize	plastid	90.93	90.46
TraesCS1A01G437500.2	Wheat	plastid	87.56	87.34
TraesCS1B01G472100.1	Wheat	plastid	86.79	87.01
TraesCS1D01G445300.1	Wheat	plastid	87.31	86.63
HORVU1Hr1G094480.1	Barley	plastid	86.79	79.01
KRG91103	Soybean	plastid	53.37	55.38
KRH35674	Soybean	plastid	53.37	55.38
GSMUA_Achr2P08390_001	Banana	plastid	56.99	55.28
VIT_03s0091g00700.t01	Wine grape	plastid	54.4	54.12
AT1G49970.1	Thale cress	plastid	53.37	53.23
CDY03582	Canola	plastid	53.37	52.96
PGSC0003DMT400065220	Potato	plastid	53.89	52.93
Solyc10g049710.1.1	Tomato	plastid	52.59	52.86
Bra014229.1-P	Field mustard	plastid	53.11	52.84
CDY59367	Canola	plastid	53.11	52.84
CDY46278	Canola	cytosol	30.57	52.21
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	24.61	31.88
Os03t0344900-00	Rice	plastid	24.61	27.86
Os03t0308100-01	Rice	plastid	18.39	25.18
Os06t0136800-01	Rice	plastid	19.17	24.92
Os02t0634500-01	Rice	plastid	17.62	22.82
Os03t0411500-01	Rice	plastid	15.29	22.78
CAA33972	Rice	cytosol	12.69	22.69
Os01t0507900-01	Rice	plastid	17.88	21.97
Os10t0580800-01	Rice	plastid	16.58	21.84
Os04t0525600-01	Rice	mitochondrion	17.1	21.36

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EntrezGene:4339792	ProteinID:AAT44299.1	EMBL:AK071333	ProteinID:BAF18407.1
ProteinID:BAS95634.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	ProteinID:EEE64896.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:Os05g0592100	EnsemblPlants:Os05t0592100-01	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381
PANTHER:PTHR10381:SF18	UniProt:Q6L4S1	SUPFAM:SSF52096	UniParc:UPI00003A928F	RefSeq:XP_015640771.1	SEG:seg

Description

Clp protease 8, CLP PROTEASE 8Peptidase S14, ClpP family protein. (Os05t0592100-01)

Coordinates

chr5:-:29495935..29499457

Molecular Weight (calculated)

42751.2 Da

IEP (calculated)

9.299

GRAVY (calculated)

-0.448

Length

386 amino acids

Sequence
(BLAST)

001: MALALRCPAA ASPSPAKSTF PPSSSPPPSR LPRRPPASCR CYYYGDGGGF RKNYDHIPKQ FREENLKDGL MDNYKNVPQF LYGLSPAQIE MFMNDDNPYD
101: RQSQRVTEES ISASRSYDEF GMYNLSGMHE GPAGYSMGMG MGTMSMGRAG RGYRRMRSSA PDLPSLLLDS RIIFLGMPIV PAVTELIAAQ FLWLDYDDRT
201: KPIYLYINST GTMDENNELV ASETDAFAIA DFINRSKSKV YTINLSMAYG QAAMLLSLGV KGKRGVLPNS ITKLYLPKVH KSGGAAIDMW IKAKELDTNT
301: DYYLELLSKG VGKPKEELAE FLKGPRYFRA QEAIDYGLAD TILHSLDGSF KPKDLTAQLA KAQEMRQSGK RPAAGAGRWS TPSVPR

Best Arabidopsis Sequence Match ( AT1G49970.1 )
(BLAST)

001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR

Arabidopsis Description

CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.