Factsheet for Os01t0271400-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00561	Sorghum	plastid	85.91	87.97
Zm00001d040322_P002	Maize	plastid	84.23	86.85
TraesCS3A01G187300.1	Wheat	plastid	80.2	83.86
TraesCS3B01G216800.1	Wheat	plastid	79.53	83.16
CDY71709	Canola	endoplasmic reticulum, extracellular	52.35	81.68
HORVU3Hr1G038610.4	Barley	plastid	76.17	79.93
TraesCS3D01G191100.2	Wheat	plastid	79.53	75.72
VIT_00s0204g00220.t01	Wine grape	plastid	64.09	65.41
CDY42955	Canola	plastid	64.77	63.28
Bra040108.1-P	Field mustard	plastid	64.43	62.95
CDY09652	Canola	plastid	64.09	62.83
CDY35605	Canola	plastid	63.76	62.71
CDY09656	Canola	plastid	64.09	62.42
CDX90492	Canola	plastid	64.09	62.22
AT4G17040.1	Thale cress	plastid	63.42	61.97
Bra012683.1-P	Field mustard	plastid	63.76	61.89
KRH04225	Soybean	plastid	63.09	61.84
Solyc08g077890.2.1	Tomato	plastid	61.74	60.93
PGSC0003DMT400067452	Potato	plastid	61.74	60.93
KRH57519	Soybean	plastid	62.08	60.86
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	31.54	59.12
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	33.22	58.58
GSMUA_Achr8P14970_001	Banana	mitochondrion	45.97	55.92
CDY43468	Canola	plastid	26.51	44.89
Os03t0344900-00	Rice	plastid	34.56	30.21
Os02t0634500-01	Rice	plastid	27.52	27.52
Os01t0507900-01	Rice	plastid	28.52	27.07
Os03t0308100-01	Rice	plastid	25.5	26.95
Os04t0525600-01	Rice	mitochondrion	27.52	26.54
Os03t0411500-01	Rice	plastid	21.48	24.71
Os05t0592100-01	Rice	plastid	31.88	24.61
Os10t0580800-01	Rice	plastid	24.16	24.57
CAA33972	Rice	cytosol	17.11	23.61
Os06t0136800-01	Rice	plastid	23.49	23.57

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EntrezGene:4325168	ProteinID:BAF04621.1	ProteinID:BAS71507.1	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:Os01g0271400
EnsemblPlants:Os01t0271400-00	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	UniProt:Q0JNQ7
MEROPS:S14.001	SUPFAM:SSF52096	UniParc:UPI0000DD8A80	RefSeq:XP_015651469.1	SEG:seg	:

Description

CHLOROPLAST PROTEASE R4Peptidase S14, ClpP family protein. (Os01t0271400-00)

Coordinates

chr1:-:9379123..9383262

Molecular Weight (calculated)

32261.1 Da

IEP (calculated)

9.370

GRAVY (calculated)

-0.061

Length

298 amino acids

Sequence
(BLAST)

001: MEAAAAFSPP RVSPDARAMF ATLPASPSPH LRLAARPRAL SASAPTTAAV AATKQRFLAP PRPDPAAPGG CGGGGARDVV AMVVPFLRGT AWQQPPPDLA
101: SFLYKNRIVY LGMCLVPSVT ELMLAEFLYL QYDDAEKPIY LYINSTGTTK NGEKLGYETE AFAIYDAMRY VKVPIFTLCV GNAWGEAALL LAAGAKGNRA
201: ALPSSTIMIK QPIGRFQGQA TDVDIARKEI RNVKIEMIKL LSRHIGKSVE EIAQDIKRPK YFSPSEAVDY GIIDKVLYNE KSQEDGGVVS ELKRSNLI

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.