Factsheet for VIT_00s0309g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	75.74	80.5
CDY71709	Canola	endoplasmic reticulum, extracellular	64.5	57.07
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	40.24	52.31
VIT_00s0204g00220.t01	Wine grape	plastid	73.96	42.81
KRH57519	Soybean	plastid	66.27	36.84
KRH04225	Soybean	plastid	65.68	36.51
PGSC0003DMT400067452	Potato	plastid	64.5	36.09
Bra040108.1-P	Field mustard	plastid	65.09	36.07
CDY42955	Canola	plastid	65.09	36.07
CDY35605	Canola	plastid	64.5	35.97
CDY09652	Canola	plastid	64.5	35.86
AT4G17040.1	Thale cress	plastid	64.5	35.74
CDY09656	Canola	plastid	64.5	35.62
CDX90492	Canola	plastid	64.5	35.5
Bra012683.1-P	Field mustard	plastid	64.5	35.5
Solyc08g077890.2.1	Tomato	plastid	61.54	34.44
Zm00001d040322_P002	Maize	plastid	58.58	34.26
EES00561	Sorghum	plastid	58.58	34.02
GSMUA_Achr9P24480_001	Banana	plastid	65.68	33.33
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	58.58	33.22
TraesCS3A01G187300.1	Wheat	plastid	55.62	32.98
TraesCS3B01G216800.1	Wheat	plastid	55.62	32.98
HORVU3Hr1G038610.4	Barley	plastid	51.48	30.63
TraesCS3D01G191100.2	Wheat	plastid	55.62	30.03
VIT_01s0011g02100.t01	Wine grape	mitochondrion	29.59	20.75
CDY43468	Canola	plastid	20.12	19.32
VIT_12s0028g01250.t01	Wine grape	plastid	28.99	16.84
VIT_07s0005g01530.t01	Wine grape	plastid	28.4	16.61
VIT_02s0025g05140.t01	Wine grape	plastid	28.4	16.49
VIT_03s0063g02300.t01	Wine grape	plastid	24.85	15.61
VIT_14s0060g02160.t01	Wine grape	plastid	28.4	14.91
VIT_14s0006g01880.t01	Wine grape	plastid	27.22	14.38
VIT_03s0091g00700.t01	Wine grape	plastid	26.63	11.6

Protein Annotations

EntrezGene:100266620	wikigene:100266620	Gene3D:3.90.226.10	MapMan:35.1	ProteinID:CBI29508	ProteinID:CBI29508.3
InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	ncoils:Coil	UniProt:D7TG85	EMBL:FN595791
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0019538	EntrezGene:LOC100266620	wikigene:LOC100266620	PFAM:PF00574	PRINTS:PR00127
PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	MEROPS:S14.001	SUPFAM:SSF52096	UniParc:UPI0001BE300D	ArrayExpress:VIT_00s0309g00080
EnsemblPlantsGene:VIT_00s0309g00080	EnsemblPlants:VIT_00s0309g00080.t01	RefSeq:XP_002267289	RefSeq:XP_002267289.2	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:D7TG85]

Coordinates

chrUn:-:22623716..22632092

Molecular Weight (calculated)

18724.1 Da

IEP (calculated)

8.674

GRAVY (calculated)

0.179

Length

169 amino acids

Sequence
(BLAST)

001: MLLISCICTC IFWSNSLLLF PISDLAIIFC CRYVKSLIFT LCVGNPWGEA ALLLVAGAKG NRSALPSSTI MLKQSCPPIN LHPIARLQGQ ATDIDLARKE
101: VKNVKAELVK LYAKHVGKSP EQIEADIRRP KYFSPSEGVE YSIIDKVLYN ERSSEDRGVV ADLKKAQLI

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.