Factsheet for Bra012683.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71709	Canola	endoplasmic reticulum, extracellular	62.22	100.0
CDX90492	Canola	plastid	99.35	99.35
CDY09656	Canola	plastid	98.37	98.69
CDY09652	Canola	plastid	97.72	98.68
Bra040108.1-P	Field mustard	plastid	95.77	96.39
AT4G17040.1	Thale cress	plastid	95.11	95.74
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	32.9	77.69
VIT_00s0204g00220.t01	Wine grape	plastid	72.31	76.03
KRH57519	Soybean	plastid	72.64	73.36
KRH04225	Soybean	plastid	71.99	72.7
Solyc08g077890.2.1	Tomato	plastid	70.03	71.19
PGSC0003DMT400067452	Potato	plastid	70.03	71.19
GSMUA_Achr9P24480_001	Banana	plastid	71.01	65.47
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	35.5	64.5
Zm00001d040322_P002	Maize	plastid	60.59	64.36
EES00561	Sorghum	plastid	60.91	64.26
TraesCS3B01G216800.1	Wheat	plastid	59.61	64.21
TraesCS3A01G187300.1	Wheat	plastid	59.28	63.86
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	61.89	63.76
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	31.6	61.01
HORVU3Hr1G038610.4	Barley	plastid	56.35	60.92
TraesCS3D01G191100.2	Wheat	plastid	59.61	58.47
CDY43468	Canola	plastid	29.32	51.14
Bra009331.1-P	Field mustard	mitochondrion	27.69	35.71
Bra013020.1-P	Field mustard	mitochondrion	26.71	34.89
Bra030756.1-P	Field mustard	plastid	33.88	32.2
Bra033332.1-P	Field mustard	plastid	25.41	26.53
Bra025079.1-P	Field mustard	plastid	24.76	26.39
Bra019764.1-P	Field mustard	plastid	23.45	25.81
Bra030504.1-P	Field mustard	plastid	24.76	25.42
Bra014229.1-P	Field mustard	plastid	31.92	25.26
Bra016816.1-P	Field mustard	plastid	21.82	24.81
Bra031777.1-P	Field mustard	plastid	21.82	24.54
Bra004177.1-P	Field mustard	plastid	23.78	23.32
Bra026972.1-P	Field mustard	cytosol, peroxisome, plasma membrane	22.8	17.9

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EnsemblPlantsGene:Bra012683	EnsemblPlants:Bra012683.1	EnsemblPlants:Bra012683.1-P	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:M4D873	PFAM:PF00574
PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	SUPFAM:SSF52096	UniParc:UPI0002540934	SEG:seg

Description

AT4G17040 (E=2e-134) | ATP-dependent Clp protease proteolytic subunit, putative

Coordinates

chrA03:-:22757406..22759623

Molecular Weight (calculated)

33533.3 Da

IEP (calculated)

9.664

GRAVY (calculated)

-0.206

Length

307 amino acids

Sequence
(BLAST)

001: MEVAAATATS FTTFRGRTSA IIPSSTRNLR SKVRCSSSSS SSLRASLSNG LLSPYTGGSI SSDFCGAKIR SKSLNPLNLS SSNPKRGVVT MVIPFSKGSA
101: HEQPPPDLAS YLFKNRIVYL GMSLVPSVTE LILAEFLYLQ YEDEEKPIYL YINSTGTTKN GEKLGYDTEA FAIYDVMGYV KPPIFTLCVG NAWGEAALLL
201: TAGAKGNRSA LPSSTIMIKQ PIARFQGQAT DVEIARKEIN HIKTEMVKLY SKHIGKSPEQ IEADMKRPKY FSPSEAVEYG IIDKVVYNER GSQDRGVVSD
301: LKKAQLI

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.