Factsheet for Bra040108.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42955	Canola	plastid	99.02	99.02
CDY35605	Canola	plastid	96.72	97.36
AT4G17040.1	Thale cress	plastid	96.07	96.07
Bra012683.1-P	Field mustard	plastid	96.39	95.77
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	33.11	77.69
VIT_00s0204g00220.t01	Wine grape	plastid	72.79	76.03
KRH57519	Soybean	plastid	73.11	73.36
KRH04225	Soybean	plastid	72.46	72.7
PGSC0003DMT400067452	Potato	plastid	69.84	70.53
Solyc08g077890.2.1	Tomato	plastid	69.51	70.2
GSMUA_Achr9P24480_001	Banana	plastid	71.48	65.47
TraesCS3B01G216800.1	Wheat	plastid	60.98	65.26
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	36.07	65.09
Zm00001d040322_P002	Maize	plastid	61.64	65.05
EES00561	Sorghum	plastid	61.97	64.95
TraesCS3A01G187300.1	Wheat	plastid	60.66	64.91
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	62.95	64.43
HORVU3Hr1G038610.4	Barley	plastid	57.7	61.97
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	31.8	61.01
TraesCS3D01G191100.2	Wheat	plastid	60.98	59.42
Bra009331.1-P	Field mustard	mitochondrion	27.87	35.71
Bra013020.1-P	Field mustard	mitochondrion	26.89	34.89
Bra030756.1-P	Field mustard	plastid	33.77	31.89
Bra025079.1-P	Field mustard	plastid	25.25	26.74
Bra033332.1-P	Field mustard	plastid	25.57	26.53
Bra019764.1-P	Field mustard	plastid	23.61	25.81
Bra030504.1-P	Field mustard	plastid	24.92	25.42
Bra014229.1-P	Field mustard	plastid	32.13	25.26
Bra016816.1-P	Field mustard	plastid	22.3	25.19
Bra031777.1-P	Field mustard	plastid	22.3	24.91
Bra004177.1-P	Field mustard	plastid	23.93	23.32
Bra026972.1-P	Field mustard	cytosol, peroxisome, plasma membrane	22.95	17.9

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EnsemblPlantsGene:Bra040108	EnsemblPlants:Bra040108.1	EnsemblPlants:Bra040108.1-P	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:M4FG81	PFAM:PF00574
PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	SUPFAM:SSF52096	UniParc:UPI000254431A	SEG:seg

Description

AT4G17040 (E=5e-145) | ATP-dependent Clp protease proteolytic subunit, putative

Coordinates

chrA01:+:10589323..10591558

Molecular Weight (calculated)

33388.2 Da

IEP (calculated)

9.664

GRAVY (calculated)

-0.196

Length

305 amino acids

Sequence
(BLAST)

001: MEVAAATATS LTTLRARSPA IIPSSTRNLR SKVRCSSSSS LRASLSNGLL SPYTGGSISS DFCGAKLRSE SLNPLNISSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIRHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PSEAVEYGII DKVVYNERSS QDRGVVSDLK
301: KAQLI

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.