Factsheet for VIT_00s0204g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71709	Canola	endoplasmic reticulum, extracellular	57.53	87.96
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	36.99	83.08
KRH57519	Soybean	plastid	77.05	74.01
KRH04225	Soybean	plastid	77.05	74.01
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	42.81	73.96
CDY35605	Canola	plastid	76.37	73.6
CDY42955	Canola	plastid	76.37	73.11
PGSC0003DMT400067452	Potato	plastid	75.34	72.85
Bra040108.1-P	Field mustard	plastid	76.03	72.79
CDY09652	Canola	plastid	75.68	72.7
AT4G17040.1	Thale cress	plastid	75.68	72.46
Bra012683.1-P	Field mustard	plastid	76.03	72.31
CDY09656	Canola	plastid	75.68	72.22
CDX90492	Canola	plastid	75.68	71.99
Solyc08g077890.2.1	Tomato	plastid	72.26	69.87
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	38.01	69.81
Zm00001d040322_P002	Maize	plastid	64.04	64.71
EES00561	Sorghum	plastid	64.38	64.6
GSMUA_Achr9P24480_001	Banana	plastid	73.63	64.56
TraesCS3A01G187300.1	Wheat	plastid	62.67	64.21
TraesCS3B01G216800.1	Wheat	plastid	62.67	64.21
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	65.41	64.09
HORVU3Hr1G038610.4	Barley	plastid	59.93	61.62
TraesCS3D01G191100.2	Wheat	plastid	62.67	58.47
CDY43468	Canola	plastid	28.77	47.73
VIT_01s0011g02100.t01	Wine grape	mitochondrion	28.08	34.02
VIT_14s0060g02160.t01	Wine grape	plastid	35.62	32.3
VIT_07s0005g01530.t01	Wine grape	plastid	26.03	26.3
VIT_12s0028g01250.t01	Wine grape	plastid	26.03	26.12
VIT_03s0091g00700.t01	Wine grape	plastid	33.56	25.26
VIT_02s0025g05140.t01	Wine grape	plastid	24.66	24.74
VIT_03s0063g02300.t01	Wine grape	plastid	21.92	23.79
VIT_14s0006g01880.t01	Wine grape	plastid	26.03	23.75

Protein Annotations

EntrezGene:100852416	wikigene:100852416	EntrezGene:100855178	wikigene:100855178	MapMan:19.4.2.9.2	Gene3D:3.90.226.10
ProteinID:CBI29573	ProteinID:CBI29573.3	ProteinID:CCB62814	ProteinID:CCB62814.1	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	ncoils:Coil	UniProt:F6I796	EMBL:FN595857	EMBL:FN596769	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	EntrezGene:LOC100852416	wikigene:LOC100852416	EntrezGene:LOC100855178	wikigene:LOC100855178	PFAM:PF00574
PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	MEROPS:S14.001	SUPFAM:SSF52096	TIGR:TC53892
UniParc:UPI000210ABD5	ArrayExpress:VIT_00s0204g00220	EnsemblPlantsGene:VIT_00s0204g00220	EnsemblPlants:VIT_00s0204g00220.t01	RefSeq:XP_003635075	RefSeq:XP_003635075.1
SEG:seg	:	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F6I796]

Coordinates

chrUn:+:12296875..12317655

Molecular Weight (calculated)

31811.2 Da

IEP (calculated)

9.403

GRAVY (calculated)

-0.130

Length

292 amino acids

Sequence
(BLAST)

001: MASNLFTHTR MLAPPTNSGT TSSNRTLASF SLRANLLSPY VGGSVASDFS GQKIRPSSLY SASFSGSHAK RGGVTMVIPF TRGSALDQPP PDLPSYLFKN
101: RIVYLGMSLV PSVTELILAE FLYLQYDDAE KPIYLYINST GTTKGGEKLG YETEAFAIYD VMGYVKSPIF TLCVGNAWGE AALLLAAGAK GNRSALPSST
201: IMIKQPIARF QGQATDIDLA RKEVKNVKAE LVKLYAKHIG KSPEEIEADI RRPKYFSPSE AVEYGIIDKV LYNERSSEDR GVVADLKKAQ LI

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.