Factsheet for VIT_14s0006g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70450	Soybean	plastid	71.88	72.1
KRH01676	Soybean	plastid	72.19	71.74
Solyc02g091280.2.1	Tomato	plastid	67.5	69.9
AT1G66670.1	Thale cress	plastid	66.88	69.26
PGSC0003DMT400078756	Potato	plastid	66.25	67.52
Bra004177.1-P	Field mustard	plastid	64.06	65.5
CDX96137	Canola	plastid	64.06	65.5
HORVU3Hr1G044510.1	Barley	extracellular	17.5	64.37
CDY36212	Canola	plastid	62.81	64.22
Os01t0507900-01	Rice	plastid	61.88	63.06
HORVU3Hr1G044530.1	Barley	plastid	57.81	60.66
GSMUA_Achr4P13550_001	Banana	plastid	69.69	60.43
TraesCS3A01G197900.1	Wheat	plastid	57.81	60.26
TraesCS3B01G229600.1	Wheat	plastid	57.81	60.26
Zm00001d009339_P001	Maize	plastid	56.88	58.71
EES00782	Sorghum	plastid	57.19	58.47
VIT_12s0028g01250.t01	Wine grape	plastid	36.56	40.21
VIT_01s0011g02100.t01	Wine grape	mitochondrion	29.69	39.42
VIT_07s0005g01530.t01	Wine grape	plastid	35.0	38.75
VIT_03s0063g02300.t01	Wine grape	plastid	26.25	31.23
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	13.75	27.67
VIT_02s0025g05140.t01	Wine grape	plastid	25.0	27.49
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	14.38	27.22
VIT_00s0204g00220.t01	Wine grape	plastid	23.75	26.03
VIT_14s0060g02160.t01	Wine grape	plastid	21.25	21.12
VIT_03s0091g00700.t01	Wine grape	plastid	22.81	18.81

Protein Annotations

EntrezGene:100265683	wikigene:100265683	MapMan:19.4.2.9.1	Gene3D:3.90.226.10	ProteinID:CCB57665	ProteinID:CCB57665.1
InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	UniProt:F6HSM4
EMBL:FN596245	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0016787	GO:GO:0019538	EntrezGene:LOC100265683
wikigene:LOC100265683	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382
PANTHER:PTHR10381	PANTHER:PTHR10381:SF20	MEROPS:S14.A03	SUPFAM:SSF52096	TIGR:TC59908	UniParc:UPI00015C95DE
ArrayExpress:VIT_14s0006g01880	EnsemblPlantsGene:VIT_14s0006g01880	EnsemblPlants:VIT_14s0006g01880.t01	unigene:Vvi.11370	RefSeq:XP_002271649	RefSeq:XP_002271649.1
SEG:seg	:	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F6HSM4]

Coordinates

chr14:+:18484299..18501260

Molecular Weight (calculated)

34791.7 Da

IEP (calculated)

9.162

GRAVY (calculated)

-0.363

Length

320 amino acids

Sequence
(BLAST)

001: MERSLTLTYA ASASRPLCFN RSPSSSSLWL PSTSRSSRKG RAVSMVKASS ASRPTLASNW DLSSLQSASA PTWLPRFEDL DTTNMLLRQR IVFLGSQVDD
101: MTADLVISQL LFLDAEDQEK DIKLFINSPG GSVTAGLGIY DAMKLCKADV STVCLGLAAS MGAFLLASGS KGKRFCMPNS RVMIHQPLGT AGGKATEMGI
201: RIREMMYHKI KLNKILSRIT GKPEQQIEAD TDRDNFMNAW EAKEYGLIDA VIDDGKPGLV APTADAGPPP KTRVWGLWKV EGSRKAKKNL PSEHKLLQNG
301: HQGGDDEKGT EQEKEASSPV

Best Arabidopsis Sequence Match ( AT1G66670.1 )
(BLAST)

001: MEMSLRLASS STSNPICLLN PGKNLNFPIR NHRIPKTSKP FCVRSSMSLS KPPRQTLSSN WDVSSFSIDS VAQSPSRLPS FEELDTTNML LRQRIVFLGS
101: QVDDMTADLV ISQLLLLDAE DSERDITLFI NSPGGSITAG MGIYDAMKQC KADVSTVCLG LAASMGAFLL ASGSKGKRYC MPNSKVMIHQ PLGTAGGKAT
201: EMSIRIREMM YHKIKLNKIF SRITGKPESE IESDTDRDNF LNPWEAKEYG LIDAVIDDGK PGLIAPIGDG TPPPKTKVWD LWKVEGTKKD NTNLPSERSM
301: TQNGYAAIE

Arabidopsis Description

CLPP3ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.