Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35674 | Soybean | plastid | 75.26 | 78.49 |
| KRG91103 | Soybean | plastid | 75.0 | 78.23 |
| GSMUA_Achr2P08390_001 | Banana | plastid | 74.48 | 72.61 |
| Bra014229.1-P | Field mustard | plastid | 70.1 | 70.1 |
| CDY59367 | Canola | plastid | 70.1 | 70.1 |
| AT1G49970.1 | Thale cress | plastid | 69.85 | 70.03 |
| CDY03582 | Canola | plastid | 69.85 | 69.67 |
| CDY46278 | Canola | cytosol | 40.46 | 69.47 |
| Solyc10g049710.1.1 | Tomato | plastid | 67.78 | 68.49 |
| PGSC0003DMT400065220 | Potato | plastid | 69.33 | 68.45 |
| Os05t0592100-01 | Rice | plastid | 54.12 | 54.4 |
| EES20050 | Sorghum | plastid | 53.87 | 53.87 |
| Zm00001d039167_P001 | Maize | plastid | 53.35 | 53.35 |
| TraesCS1A01G437500.2 | Wheat | plastid | 52.58 | 52.71 |
| TraesCS1B01G472100.1 | Wheat | plastid | 52.06 | 52.47 |
| TraesCS1D01G445300.1 | Wheat | plastid | 52.06 | 51.93 |
| HORVU1Hr1G094480.1 | Barley | plastid | 52.58 | 48.11 |
| VIT_00s0204g00220.t01 | Wine grape | plastid | 25.26 | 33.56 |
| VIT_14s0060g02160.t01 | Wine grape | plastid | 26.8 | 32.3 |
| VIT_01s0011g02100.t01 | Wine grape | mitochondrion | 17.53 | 28.22 |
| VIT_00s0309g00040.t01 | Wine grape | endoplasmic reticulum | 11.08 | 27.04 |
| VIT_00s0309g00080.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 11.6 | 26.63 |
| VIT_02s0025g05140.t01 | Wine grape | plastid | 19.85 | 26.46 |
| VIT_03s0063g02300.t01 | Wine grape | plastid | 17.27 | 24.91 |
| VIT_07s0005g01530.t01 | Wine grape | plastid | 18.3 | 24.57 |
| VIT_14s0006g01880.t01 | Wine grape | plastid | 18.81 | 22.81 |
| VIT_12s0028g01250.t01 | Wine grape | plastid | 17.01 | 22.68 |
Protein Annotations
| EntrezGene:100253136 | wikigene:100253136 | MapMan:19.4.2.9.2 | Gene3D:3.90.226.10 | ProteinID:CBI22465 | ProteinID:CBI22465.3 |
| InterPro:ClpP | InterPro:ClpP/TepA | InterPro:ClpP/crotonase-like_dom_sf | UniProt:D7SXR5 | EMBL:FN595242 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0006396 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009532 | GO:GO:0009534 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009658 | GO:GO:0009840 | GO:GO:0009941 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0019538 | EntrezGene:LOC100253136 | wikigene:LOC100253136 |
| PFAM:PF00574 | PRINTS:PR00127 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF18 | SUPFAM:SSF52096 | TIGR:TC52583 |
| TIGR:TC55075 | TIGR:TC56242 | UniParc:UPI00015CD10F | ArrayExpress:VIT_03s0091g00700 | EnsemblPlantsGene:VIT_03s0091g00700 | EnsemblPlants:VIT_03s0091g00700.t01 |
| unigene:Vvi.6916 | RefSeq:XP_002264383 | RefSeq:XP_002264383.1 | SEG:seg | : | : |
Description
ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:D7SXR5]
Coordinates
chr3:+:7137444..7143607
Molecular Weight (calculated)
42448.5 Da
IEP (calculated)
8.703
GRAVY (calculated)
-0.432
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSLLSPLS SPISPSTVDA HDVGSAGGAV KSSFLHCTKL FSAPKLGRSA VRRGFRSPSA KASFDHIPKQ FREGNLQDGL MENYKNVPQY FYGLSPSQMD
101: MFMTEDNPIS RQSERVTEES ISSARNYMDN GGMWSLSGVN DRGPSKYSMS VSMYRGGRGS GRPRTAPPDL PSLLLDARIC YLGMPIVPAV AELLVAQFMW
201: LDFDNPSKPI YLYINSTGTQ NEKMETVGSE TEAYAIADSM AYCKSDVYTV NCGTAYGQAA MLLSVGAKGY RGLQPNASTK LYLPKVNRSS GATIDMWIKA
301: KELDANSEYY IELLAKGTGK TKEEIKKDVE RPKYLQAQEA IDYGLADKII SSMDPAYEKR NYDEMLAQAK SMRRAAGAGP QAAPSGFR
101: MFMTEDNPIS RQSERVTEES ISSARNYMDN GGMWSLSGVN DRGPSKYSMS VSMYRGGRGS GRPRTAPPDL PSLLLDARIC YLGMPIVPAV AELLVAQFMW
201: LDFDNPSKPI YLYINSTGTQ NEKMETVGSE TEAYAIADSM AYCKSDVYTV NCGTAYGQAA MLLSVGAKGY RGLQPNASTK LYLPKVNRSS GATIDMWIKA
301: KELDANSEYY IELLAKGTGK TKEEIKKDVE RPKYLQAQEA IDYGLADKII SSMDPAYEKR NYDEMLAQAK SMRRAAGAGP QAAPSGFR
001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR
Arabidopsis Description
CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.