CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039167_P001	Maize	plastid	96.91	96.91
Os05t0592100-01	Rice	plastid	91.49	91.97
TraesCS1B01G472100.1	Wheat	plastid	87.63	88.31
TraesCS1A01G437500.2	Wheat	plastid	87.89	88.11
TraesCS1D01G445300.1	Wheat	plastid	87.63	87.4
HORVU1Hr1G094480.1	Barley	plastid	86.86	79.48
GSMUA_Achr2P08390_001	Banana	plastid	57.73	56.28
KRH35674	Soybean	plastid	53.09	55.38
KRG91103	Soybean	plastid	53.09	55.38
AT1G49970.1	Thale cress	plastid	54.12	54.26
VIT_03s0091g00700.t01	Wine grape	plastid	53.87	53.87
CDY03582	Canola	plastid	53.87	53.73
Bra014229.1-P	Field mustard	plastid	53.35	53.35
CDY59367	Canola	plastid	53.35	53.35
PGSC0003DMT400065220	Potato	plastid	53.61	52.93
Solyc10g049710.1.1	Tomato	plastid	51.8	52.34
CDY46278	Canola	cytosol	30.41	52.21
EES00561	Sorghum	plastid	23.45	31.27
EER92371	Sorghum	plastid	19.59	26.86
OQU92609	Sorghum	plastid	22.68	25.96
KXG19238	Sorghum	plastid	17.53	23.29
KXG26753	Sorghum	plastid	17.78	23.0
EER94414	Sorghum	plastid	17.01	22.84
OQU85365	Sorghum	plastid	17.53	22.01
EES00782	Sorghum	plastid	17.53	21.73
EES07709	Sorghum	plastid	14.95	21.01

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EntrezGene:8066561	UniProt:C5YWZ8	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	EnsemblPlants:EES20050	ProteinID:EES20050	ProteinID:EES20050.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	GO:GO:0009840
GO:GO:0009941	GO:GO:0016787	GO:GO:0019538	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381
PANTHER:PTHR10381:SF18	EnsemblPlantsGene:SORBI_3009G255300	SUPFAM:SSF52096	unigene:Sbi.1622	UniParc:UPI0001A8942F	RefSeq:XP_002441620.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:58919834..58924289

Molecular Weight (calculated)

42897.4 Da

IEP (calculated)

9.515

GRAVY (calculated)

-0.448

Length

388 amino acids

Sequence
(BLAST)

001: MALALRCPPA ATSSRSPFLP SPSPAPPGRL PRRPPASWRC HGYYGDDGFR KSYDHIPKQF REENLKDGLM DNYKNVPQFL YGLSSAQMEM FMNDDNPYNR
101: QSQKVTEESV SAARSYDEFG MYTLSGMHEG PASYSMGMGM GGSMSMSMGR GGRGYRRMRS SAPDLPSLLL DSRIIFLGMP IVPAVTELIA AQFLWLDYDD
201: RTKPIYLYIN STGTMDENNE LVASETDAYA IADFINRSKS KVYTINLSMA YGQAAMLLSL GVKGKRGVLP NSITKLHLPK VHKSGGAAID MWIKAKELDT
301: NTDYYLELLS KGVGKPKEEL AEFLKGPRYF RAQEAIDYGL ADTILHSLDG SFKPKDLTAQ LAKAQAMRQS GKRAAAGAGR WSTPTAPR

Best Arabidopsis Sequence Match ( AT1G49970.1 )
(BLAST)

001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR

Arabidopsis Description

CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.