CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0308100-01	Rice	plastid	91.87	92.2
TraesCS4D01G184400.1	Wheat	plastid	90.11	90.43
TraesCS4B01G181600.1	Wheat	plastid	89.4	89.72
TraesCS4A01G121500.1	Wheat	plastid	89.4	89.72
Zm00001d028895_P001	Maize	plastid	95.05	85.94
HORVU4Hr1G053660.1	Barley	plastid	90.11	83.33
Bra033332.1-P	Field mustard	plastid	73.14	70.41
CDX89962	Canola	plastid	73.14	70.41
AT1G02560.1	Thale cress	plastid	73.14	69.46
CDY51306	Canola	plastid	67.84	69.31
VIT_07s0005g01530.t01	Wine grape	plastid	69.96	68.51
KRH31786	Soybean	nucleus, plastid	72.79	67.99
GSMUA_Achr8P22320_001	Banana	plastid	71.38	67.33
KRH69210	Soybean	nucleus, plastid	73.85	67.2
CDY15250	Canola	plastid	72.44	66.99
Solyc01g100520.2.1	Tomato	plastid	70.67	66.89
Bra030504.1-P	Field mustard	plastid	69.96	66.22
CDY15433	Canola	plastid	69.96	65.13
KRH68271	Soybean	plastid	59.72	56.15
OQU85365	Sorghum	plastid	41.7	38.19
KXG26753	Sorghum	plastid	39.58	37.33
EER94414	Sorghum	plastid	36.04	35.29
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	69.61	34.93
EES00782	Sorghum	plastid	37.46	33.87
EES07709	Sorghum	plastid	28.27	28.99
KXG19238	Sorghum	plastid	28.27	27.4
EES00561	Sorghum	plastid	26.86	26.12
OQU92609	Sorghum	plastid	26.5	22.12
EES20050	Sorghum	plastid	26.86	19.59

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EntrezGene:8083988	UniProt:C5WMG5	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	EnsemblPlants:EER92371	ProteinID:EER92371	ProteinID:EER92371.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008236	GO:GO:0016787	GO:GO:0019538	HAMAP:MF_00444	PFAM:PF00574
PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF12	EnsemblPlantsGene:SORBI_3001G395300
SUPFAM:SSF52096	unigene:Sbi.8107	UniParc:UPI0001A82B21	RefSeq:XP_002465373.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:68125232..68128321

Molecular Weight (calculated)

30514.9 Da

IEP (calculated)

8.769

GRAVY (calculated)

-0.133

Length

283 amino acids

Sequence
(BLAST)

001: MATATATSSS SLTTPLLRPN PNTNPAPRSL QLLRSRRCAR AVTAAVAGGP VPYGAAPRRG IWSIRDDLVV PRSPYFPVES AAGQERGPSP MVMERFQSVV
101: SQLFQHRIIR CGGPVEDDMA NIIVAQLLYL DAIDPTKDII MYVNSPGGSV TAGMAIFDTM KHIRPDVSTV CIGLAASMGA FLLSAGTKGK RYSLPNSRIM
201: IHQPLGGAQG QETDLEIQAN EMLHHKANLN GYLAYHTGQP LDKINVDTDR DYFMSAKEAK EYGLIDGVIM NPLKALQPLP ASS

Best Arabidopsis Sequence Match ( AT1G02560.1 )
(BLAST)

001: MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA

Arabidopsis Description

CLPP5ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WMF0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.