CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040322_P002	Maize	plastid	96.56	97.23
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	87.97	85.91
TraesCS3B01G216800.1	Wheat	plastid	83.51	85.26
TraesCS3A01G187300.1	Wheat	plastid	83.16	84.91
HORVU3Hr1G038610.4	Barley	plastid	80.07	82.04
CDY71709	Canola	endoplasmic reticulum, extracellular	52.23	79.58
TraesCS3D01G191100.2	Wheat	plastid	83.51	77.64
VIT_00s0204g00220.t01	Wine grape	plastid	64.6	64.38
KRH04225	Soybean	plastid	65.98	63.16
CDY42955	Canola	plastid	65.29	62.3
KRH57519	Soybean	plastid	64.95	62.17
Bra040108.1-P	Field mustard	plastid	64.95	61.97
CDY09652	Canola	plastid	64.6	61.84
CDY35605	Canola	plastid	64.26	61.72
CDY09656	Canola	plastid	64.6	61.44
CDX90492	Canola	plastid	64.6	61.24
AT4G17040.1	Thale cress	plastid	63.92	60.98
Bra012683.1-P	Field mustard	plastid	64.26	60.91
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	32.65	59.75
PGSC0003DMT400067452	Potato	plastid	61.86	59.6
Solyc08g077890.2.1	Tomato	plastid	61.17	58.94
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	34.02	58.58
GSMUA_Achr8P14970_001	Banana	mitochondrion	46.39	55.1
CDY43468	Canola	plastid	26.8	44.32
OQU92609	Sorghum	plastid	34.71	29.79
KXG26753	Sorghum	plastid	29.55	28.67
OQU85365	Sorghum	plastid	28.87	27.18
EER92371	Sorghum	plastid	26.12	26.86
EES00782	Sorghum	plastid	25.77	23.96
EER94414	Sorghum	plastid	23.71	23.88
EES20050	Sorghum	plastid	31.27	23.45
KXG19238	Sorghum	plastid	23.37	23.29
EES07709	Sorghum	plastid	20.62	21.74

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EntrezGene:8074526	UniProt:C5XH66	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	ncoils:Coil	EnsemblPlants:EES00561	ProteinID:EES00561	ProteinID:EES00561.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	EnsemblPlantsGene:SORBI_3003G128400
SUPFAM:SSF52096	unigene:Sbi.233	UniParc:UPI0001A84A6F	RefSeq:XP_002455441.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:11789543..11795243

Molecular Weight (calculated)

31898.8 Da

IEP (calculated)

9.648

GRAVY (calculated)

-0.064

Length

291 amino acids

Sequence
(BLAST)

001: MEAAAATAAA LSPPRVALDA RTLFSPPRSL PASPSSQLRL AARPRALAAA KPRFLSPHRE PAVDGGRGAR DVVAMVVPFL RGTAWEQPPP DLASFLYKNR
101: IVYLGMCLVP SVTELMLAEF LYLQYDDAEK PIYLYINSTG TTKNGEKLGY ETEALAVYDA MRYVKVPIFT LCVGNAWGEA ALLLAAGAKG NRAALPSSTI
201: MIKQPIGRFQ GQATDVDIAR KEIRNVKIEM VKLLARHIGK PIEEIARDIR RPKYFSPSEA VDYGIIDKVI YNEKIQEDGG VVSELKRSNL I

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.