Factsheet for GSMUA_Achr8P14970_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	31.43	59.23
TraesCS3B01G216800.1	Wheat	plastid	55.1	47.37
TraesCS3A01G187300.1	Wheat	plastid	54.69	47.02
HORVU3Hr1G038610.4	Barley	plastid	53.88	46.48
EES00561	Sorghum	plastid	55.1	46.39
Zm00001d040322_P002	Maize	plastid	54.69	46.37
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	55.92	45.97
GSMUA_Achr9P24480_001	Banana	plastid	60.82	44.74
TraesCS3D01G191100.2	Wheat	plastid	55.1	43.13
GSMUA_Achr4P06560_001	Banana	cytosol, plastid, vacuole	11.02	39.71
GSMUA_AchrUn_...	Banana	cytosol	25.31	30.54
GSMUA_Achr3P08150_001	Banana	plastid	37.55	27.3
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	24.49	27.27
GSMUA_Achr5P10890_001	Banana	plastid	28.98	26.59
GSMUA_Achr8P05270_001	Banana	plastid	25.71	23.68
GSMUA_Achr8P22320_001	Banana	plastid	26.94	22.0
GSMUA_Achr1P08260_001	Banana	plastid	24.9	21.25
GSMUA_Achr2P08390_001	Banana	plastid	33.47	20.6
GSMUA_Achr4P13550_001	Banana	plastid	25.31	16.8

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G14970_001	EnsemblPlants:GSMUA_Achr8P14970_001	EnsemblPlants:GSMUA_Achr8T14970_001	UniProt:M0TQK0	PFAM:PF00574
PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	SUPFAM:SSF52096	UniParc:UPI000294828C	SEG:seg

Description

ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G14970_001]

Coordinates

chr8:+:12496006..12501094

Molecular Weight (calculated)

28052.8 Da

IEP (calculated)

9.522

GRAVY (calculated)

-0.393

Length

245 amino acids

Sequence
(BLAST)

001: MFWRERERGS TGTQNGIRSR RFSFSPLHGR LRCRKSTSRR FLELVPFRRD DAREPPPPDL ASSLYKNRIV YLGMPLVPSV TELILAEFLY LQSEDAVQPI
101: NLYINSAGAA KVGEKLPSVT EAFAIYDVMR FVKPPIFTLC VGNAWGEAAL LLAAGTKGHR AALPSSRIMI RRHAAQCQEE DTDSVRKIVR DTNFELICLY
201: SFHTGEPPWK ISEDIRRPKY LTPHEAVEYG IIDKVLYNER EPKER

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.