Factsheet for GSMUA_Achr11P06600_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71709	Canola	endoplasmic reticulum, extracellular	77.69	52.88
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	52.31	42.77
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	52.31	40.24
GSMUA_Achr4P06560_001	Banana	cytosol, plastid, vacuole	20.0	38.24
VIT_00s0204g00220.t01	Wine grape	plastid	83.08	36.99
CDY43468	Canola	plastid	49.23	36.36
PGSC0003DMT400067452	Potato	plastid	80.0	34.44
Solyc08g077890.2.1	Tomato	plastid	78.46	33.77
KRH04225	Soybean	plastid	78.46	33.55
KRH57519	Soybean	plastid	78.46	33.55
AT4G17040.1	Thale cress	plastid	78.46	33.44
GSMUA_Achr9P24480_001	Banana	plastid	85.38	33.33
CDY09652	Canola	plastid	77.69	33.22
CDY42955	Canola	plastid	77.69	33.11
Bra040108.1-P	Field mustard	plastid	77.69	33.11
CDY09656	Canola	plastid	77.69	33.01
CDY35605	Canola	plastid	76.92	33.0
Bra012683.1-P	Field mustard	plastid	77.69	32.9
CDX90492	Canola	plastid	77.69	32.9
GSMUA_Achr8P14970_001	Banana	mitochondrion	59.23	31.43
GSMUA_AchrUn_...	Banana	cytosol	32.31	20.69
GSMUA_Achr5P10890_001	Banana	plastid	40.0	19.48
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	31.54	18.64
GSMUA_Achr3P08150_001	Banana	plastid	47.69	18.4
GSMUA_Achr1P08260_001	Banana	plastid	33.85	15.33
GSMUA_Achr8P05270_001	Banana	plastid	29.23	14.29
GSMUA_Achr8P22320_001	Banana	plastid	32.31	14.0
GSMUA_Achr4P13550_001	Banana	plastid	32.31	11.38
GSMUA_Achr2P08390_001	Banana	plastid	34.62	11.31

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr11G06600_001	EnsemblPlants:GSMUA_Achr11P06600_001	EnsemblPlants:GSMUA_Achr11T06600_001	UniProt:M0RPZ0	PFAM:PF00574
PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF25	SUPFAM:SSF52096	UniParc:UPI0002955115	SEG:seg

Description

ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G06600_001]

Coordinates

chr11:+:5200016..5203525

Molecular Weight (calculated)

14360.5 Da

IEP (calculated)

8.000

GRAVY (calculated)

0.198

Length

130 amino acids

Sequence
(BLAST)

001: MLAEFLYLQY EDVEKPIYLY INSTGTTKAK KLSYETEAFA IYDVMCSVKS PIFTLCVGNG WGEAALLLAA GSKGNRAALP SSSTIMIKQP IARFQGQASD
101: VDLARKEIKN VKAELVNLYL FCYGTFVPLI

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.