Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 5
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0309g00080.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 80.5 | 75.74 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 42.77 | 52.31 |
| CDY71709 | Canola | endoplasmic reticulum, extracellular | 61.01 | 50.79 |
| VIT_00s0204g00220.t01 | Wine grape | plastid | 69.81 | 38.01 |
| KRH57519 | Soybean | plastid | 64.15 | 33.55 |
| KRH04225 | Soybean | plastid | 64.15 | 33.55 |
| PGSC0003DMT400067452 | Potato | plastid | 63.52 | 33.44 |
| Zm00001d040322_P002 | Maize | plastid | 59.75 | 32.87 |
| EES00561 | Sorghum | plastid | 59.75 | 32.65 |
| TraesCS3B01G216800.1 | Wheat | plastid | 57.23 | 31.93 |
| TraesCS3A01G187300.1 | Wheat | plastid | 57.23 | 31.93 |
| CDY09652 | Canola | plastid | 61.01 | 31.91 |
| CDY42955 | Canola | plastid | 61.01 | 31.8 |
| Bra040108.1-P | Field mustard | plastid | 61.01 | 31.8 |
| AT4G17040.1 | Thale cress | plastid | 61.01 | 31.8 |
| CDY09656 | Canola | plastid | 61.01 | 31.7 |
| CDY35605 | Canola | plastid | 60.38 | 31.68 |
| Bra012683.1-P | Field mustard | plastid | 61.01 | 31.6 |
| CDX90492 | Canola | plastid | 61.01 | 31.6 |
| Os01t0271400-00 | Rice | nucleus, plasma membrane, plastid | 59.12 | 31.54 |
| Solyc08g077890.2.1 | Tomato | plastid | 59.75 | 31.46 |
| HORVU3Hr1G038610.4 | Barley | plastid | 54.72 | 30.63 |
| GSMUA_Achr9P24480_001 | Banana | plastid | 63.52 | 30.33 |
| TraesCS3D01G191100.2 | Wheat | plastid | 57.23 | 29.07 |
| VIT_01s0011g02100.t01 | Wine grape | mitochondrion | 32.7 | 21.58 |
| CDY43468 | Canola | plastid | 22.01 | 19.89 |
| VIT_02s0025g05140.t01 | Wine grape | plastid | 31.45 | 17.18 |
| VIT_07s0005g01530.t01 | Wine grape | plastid | 30.82 | 16.95 |
| VIT_12s0028g01250.t01 | Wine grape | plastid | 30.19 | 16.49 |
| VIT_03s0063g02300.t01 | Wine grape | plastid | 27.67 | 16.36 |
| VIT_14s0060g02160.t01 | Wine grape | plastid | 30.82 | 15.22 |
| VIT_14s0006g01880.t01 | Wine grape | plastid | 27.67 | 13.75 |
| VIT_03s0091g00700.t01 | Wine grape | plastid | 27.04 | 11.08 |
Protein Annotations
| Gene3D:3.90.226.10 | MapMan:35.1 | ProteinID:CBI29506 | ProteinID:CBI29506.3 | InterPro:ClpP | InterPro:ClpP/TepA |
| InterPro:ClpP/crotonase-like_dom_sf | UniProt:D7TG83 | EMBL:FN595791 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 | PFAM:PF00574 |
| PRINTS:PR00127 | PANTHER:PTHR10381 | PANTHER:PTHR10381:SF25 | SUPFAM:SSF52096 | UniParc:UPI0001BE300B | ArrayExpress:VIT_00s0309g00040 |
| EnsemblPlantsGene:VIT_00s0309g00040 | EnsemblPlants:VIT_00s0309g00040.t01 | SEG:seg | : | : | : |
Description
ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:D7TG83]
Coordinates
chrUn:-:22607407..22608902
Molecular Weight (calculated)
17632.6 Da
IEP (calculated)
8.893
GRAVY (calculated)
0.108
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MYCTVSMLDT LVRSFWSDSL LLFPISELAI IFCSRYVKSP IFTLCIGNAW GEAALLLAAG AKGNRSALPS STIVIKQSCP PINLHPIARF QGQATDIDHL
101: ARKEVKNVKA ELVKLYAKPM GKSPEQIEAD IRRPKYFSPS GAVEYGIIDK VLYNEIKEL
101: ARKEVKNVKA ELVKLYAKPM GKSPEQIEAD IRRPKYFSPS GAVEYGIIDK VLYNEIKEL
001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI
Arabidopsis Description
CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.