Factsheet for Solyc08g077890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067452	Potato	plastid	94.7	94.7
CDY71709	Canola	endoplasmic reticulum, extracellular	54.97	86.91
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	33.77	78.46
VIT_00s0204g00220.t01	Wine grape	plastid	69.87	72.26
AT4G17040.1	Thale cress	plastid	71.52	70.82
CDY09652	Canola	plastid	70.86	70.39
KRH04225	Soybean	plastid	70.53	70.07
Bra012683.1-P	Field mustard	plastid	71.19	70.03
CDY09656	Canola	plastid	70.86	69.93
CDY42955	Canola	plastid	70.53	69.84
CDY35605	Canola	plastid	69.87	69.64
Bra040108.1-P	Field mustard	plastid	70.2	69.51
KRH57519	Soybean	plastid	69.87	69.41
CDX90492	Canola	plastid	70.53	69.38
GSMUA_Achr9P24480_001	Banana	plastid	71.19	64.56
TraesCS3A01G187300.1	Wheat	plastid	58.61	62.11
TraesCS3B01G216800.1	Wheat	plastid	58.28	61.75
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	60.93	61.74
Zm00001d040322_P002	Maize	plastid	58.94	61.59
VIT_00s0309g00080.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	34.44	61.54
EES00561	Sorghum	plastid	58.94	61.17
VIT_00s0309g00040.t01	Wine grape	endoplasmic reticulum	31.46	59.75
HORVU3Hr1G038610.4	Barley	plastid	55.63	59.15
TraesCS3D01G191100.2	Wheat	plastid	58.28	56.23
CDY43468	Canola	plastid	26.82	46.02
Solyc04g009310.2.1	Tomato	plastid	24.83	31.78
Solyc01g099690.2.1	Tomato	plastid	34.11	31.6
Solyc01g007490.2.1	Tomato	plastid	19.21	28.16
Solyc01g100520.2.1	Tomato	plastid	26.82	27.09
Solyc10g051310.1.1	Tomato	plastid	24.5	26.91
Solyc10g049710.1.1	Tomato	plastid	33.11	26.04
Solyc08g079620.2.1	Tomato	plastid	23.18	24.22
Solyc02g091280.2.1	Tomato	plastid	23.84	23.3
Solyc08g075750.2.1	Tomato	plastid	23.18	23.18
Solyc09g065790.1.1	Tomato	cytosol	11.59	19.89

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	ncoils:Coil
GO:GO:0000302	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0010468
GO:GO:0016787	GO:GO:0019538	UniProt:K4CNE8	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381
PANTHER:PTHR10381:SF25	MEROPS:S14.003	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc08g077890.2	EnsemblPlants:Solyc08g077890.2.1	UniParc:UPI000276C8A2
SEG:seg	:	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G17040) UniProtKB/Swiss-Prot;Acc:Q8LB10]

Coordinates

chr8:+:61794412..61801215

Molecular Weight (calculated)

33132.6 Da

IEP (calculated)

7.396

GRAVY (calculated)

-0.175

Length

302 amino acids

Sequence
(BLAST)

001: MEAVTIASHF SPATGIRLSS TASCRASAPK RTLRFSPSTK SSLSTTFISP FIGSSLFSDL SGQRIRPDSL YPSSSTGFIP KRAVVTMVIP FGGDPSQDHP
101: PDLASYLFKN RIVYLGMSLV PSVTELILAE FLYLQYEDED KPIYFYINST GTTKGGEKLG YETEAFAVYD VMSYVKPPIF TLCVGNAWGE AALLLAAGSK
201: GNRAALPSST IMIKQPISQF QGQATDVEIM RKEVNNVKAE LVKLYSENTG KSPEEIEEDI KRPKYFSPSE AVEYGIIDKV VYNERGNKDR GVVSDLKKAQ
301: LI

Best Arabidopsis Sequence Match ( AT4G17040.1 )
(BLAST)

001: MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE
101: QPPPDLASYL FKNRIVYLGM SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP PIFTLCVGNA WGEAALLLTA
201: GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301: KAQLI

Arabidopsis Description

CLPR4ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.