Factsheet for Solyc04g009310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
golgi 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082481	Potato	mitochondrion	98.73	98.73
CDX69964	Canola	plastid	51.69	81.33
VIT_01s0011g02100.t01	Wine grape	mitochondrion	82.63	80.91
CDY61915	Canola	mitochondrion	79.24	79.24
Bra013020.1-P	Field mustard	mitochondrion	77.54	77.87
CDY02210	Canola	mitochondrion	77.54	77.87
KRH29139	Soybean	mitochondrion, nucleus	78.39	77.73
KRH24178	Soybean	mitochondrion	77.54	77.54
CDY21523	Canola	mitochondrion	77.54	76.89
AT5G23140.1	Thale cress	mitochondrion, plastid	78.39	76.76
Bra009331.1-P	Field mustard	mitochondrion	76.69	76.05
GSMUA_AchrUn_...	Banana	cytosol	56.36	65.52
Zm00001d025891_P001	Maize	mitochondrion	65.25	59.23
Zm00001d002969_P001	Maize	mitochondrion	64.83	59.07
GSMUA_Achr5P10890_001	Banana	plastid	60.59	53.56
TraesCS2B01G393400.1	Wheat	plastid	64.41	51.35
TraesCS2D01G372600.1	Wheat	plastid	65.25	51.33
KXG26753	Sorghum	plastid	64.83	51.0
Zm00001d017330_P001	Maize	plastid	60.59	50.71
TraesCS6A01G220500.1	Wheat	plastid	63.56	50.0
TraesCS6B01G262000.1	Wheat	plastid	63.14	49.67
TraesCS6D01G214700.1	Wheat	plastid	61.44	48.99
Os04t0525600-01	Rice	mitochondrion	63.98	48.87
Zm00001d051203_P001	Maize	plastid	61.44	47.7
Os02t0634500-01	Rice	plastid	60.17	47.65
OQU85365	Sorghum	plastid	61.44	46.93
HORVU2Hr1G090470.1	Barley	plastid	64.83	45.27
Solyc01g007490.2.1	Tomato	plastid	30.93	35.44
HORVU6Hr1G059510.8	Barley	cytosol, peroxisome	63.14	34.41
Solyc01g100520.2.1	Tomato	plastid	42.37	33.44
Solyc10g051310.1.1	Tomato	plastid	32.63	28.0
Solyc02g091280.2.1	Tomato	plastid	36.44	27.83
Solyc09g065790.1.1	Tomato	cytosol	19.92	26.7
Solyc08g075750.2.1	Tomato	plastid	33.9	26.49
Solyc08g077890.2.1	Tomato	plastid	31.78	24.83
Solyc08g079620.2.1	Tomato	plastid	29.66	24.22
Solyc01g099690.2.1	Tomato	plastid	29.66	21.47
Solyc10g049710.1.1	Tomato	plastid	24.58	15.1

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS
InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0008270	GO:GO:0009532	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009840	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538
GO:GO:0050897	UniProt:K4BP87	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381
ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF40	MEROPS:S14.A02	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc04g009310.2
EnsemblPlants:Solyc04g009310.2.1	UniParc:UPI00027657E2	SEG:seg	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G23140) UniProtKB/Swiss-Prot;Acc:Q9FN42]

Coordinates

chr4:+:2760682..2765405

Molecular Weight (calculated)

26255.7 Da

IEP (calculated)

7.697

GRAVY (calculated)

-0.238

Length

236 amino acids

Sequence
(BLAST)

001: MRTQIVHKLW NRRINGTPLN SKRFYGLIPM VIEHTSRGER AYDIFSRLLK ERIICINGAI DDATSHVVVA QLLFLESENP SKPIHMYLNS PGGAVTAGLA
101: IYDTMQYIRS PINTICLGQA ASMGSLLLAA GAKGERRSLP NASIMIHQPS GGYSGQAKDL TIHTKQIVRV WDTLNDLYAK HTGQPLDIIQ KNMDRDYFMT
201: PEEAKEFGII DEVIDERPMA LVTDAIANET KEKGSS

Best Arabidopsis Sequence Match ( AT5G23140.1 )
(BLAST)

001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S

Arabidopsis Description

CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.