Factsheet for Os02t0634500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
extracellular: 28232208

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G262000.1	Wheat	plastid	85.91	85.33
TraesCS6D01G214700.1	Wheat	plastid	84.56	85.14
TraesCS6A01G220500.1	Wheat	plastid	85.57	85.0
Zm00001d051203_P001	Maize	plastid	82.55	80.92
Zm00001d017330_P001	Maize	plastid	76.51	80.85
OQU85365	Sorghum	plastid	82.55	79.61
Os04t0525600-01	Rice	mitochondrion	71.81	69.26
GSMUA_AchrUn_...	Banana	cytosol	46.64	68.47
CDX69964	Canola	plastid	32.21	64.0
CDY61915	Canola	mitochondrion	48.32	61.02
VIT_01s0011g02100.t01	Wine grape	mitochondrion	49.33	61.0
KRH24178	Soybean	mitochondrion	47.99	60.59
Bra009331.1-P	Field mustard	mitochondrion	48.32	60.5
KRH29139	Soybean	mitochondrion, nucleus	48.32	60.5
Solyc04g009310.2.1	Tomato	plastid	47.65	60.17
PGSC0003DMT400082481	Potato	mitochondrion	47.65	60.17
CDY21523	Canola	mitochondrion	47.65	59.66
GSMUA_Achr5P10890_001	Banana	plastid	53.36	59.55
Bra013020.1-P	Field mustard	mitochondrion	46.64	59.15
AT5G23140.1	Thale cress	mitochondrion, plastid	47.65	58.92
CDY02210	Canola	mitochondrion	46.31	58.72
HORVU6Hr1G059510.8	Barley	cytosol, peroxisome	85.23	58.66
PGSC0003DMT400027435	Potato	mitochondrion	46.31	57.98
Os03t0308100-01	Rice	plastid	39.26	41.49
Os10t0580800-01	Rice	plastid	30.54	31.06
Os03t0411500-01	Rice	plastid	26.51	30.5
CAA33972	Rice	cytosol	21.14	29.17
Os01t0507900-01	Rice	plastid	30.2	28.66
Os06t0136800-01	Rice	plastid	27.52	27.61
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	27.52	27.52
Os03t0344900-00	Rice	plastid	29.53	25.81
Os05t0592100-01	Rice	plastid	22.82	17.62

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	EntrezGene:4330071	EMBL:AK062167	ProteinID:BAD25310.1	ProteinID:BAF09426.1
ProteinID:BAS79928.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008236	GO:GO:0016787	GO:GO:0019538	HAMAP:MF_00444	EnsemblPlantsGene:Os02g0634500
EnsemblPlants:Os02t0634500-01	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381
PANTHER:PTHR10381:SF40	UniProt:Q6H7I9	MEROPS:S14.A02	SUPFAM:SSF52096	UniParc:UPI00003B440F	RefSeq:XP_015626875.1
RefSeq:XP_015626876.1	SEG:seg	:	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit 3, Clp protease 3Similar to ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp). (Os02t0634500-01)

Coordinates

chr2:+:25431343..25432503

Molecular Weight (calculated)

31962.5 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.155

Length

298 amino acids

Sequence
(BLAST)

001: MTPSALAHLA SASPLPAFSP KPRARPGSAA GPALRRLAVA APAPRAYFSS SPMPYQPQPQ QPAGYSSHQA FGLVPMVIET TSRGERAYDI FSRLLKERIV
101: LIHGPIADET ASLVVAQLLF LESENPLKPV HLYINSPGGV VTAGLAIYDT MQYIRCPVTT LCIGQAASMG SLLLAAGARG ERRALPNARV MIHQPSGGAQ
201: GQATDIAIQA KEILKLRDRL NKIYQKHTGQ EIDKIEQCME RDLFMDPEEA RDWGLIDEVI ENRPASLIPE GATGVDLPHH SAAGVGGRGR DVEEPSAV

Best Arabidopsis Sequence Match ( AT5G23140.1 )
(BLAST)

001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S

Arabidopsis Description

CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.