Factsheet for Os03t0411500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G083440.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.41	92.21
TraesCS4D01G157200.1	Wheat	plastid	82.63	80.45
EES07709	Sorghum	plastid	84.94	79.71
TraesCS4B01G165100.1	Wheat	plastid	81.47	79.32
TraesCS4A01G149900.1	Wheat	plastid	82.63	77.26
HORVU4Hr1G038160.2	Barley	plastid	80.69	73.85
CDY21009	Canola	plastid	62.55	60.0
CDY31211	Canola	plastid	62.55	60.0
VIT_03s0063g02300.t01	Wine grape	plastid	62.16	59.85
GSMUA_Achr8P05270_001	Banana	plastid	60.62	59.02
Bra031777.1-P	Field mustard	plastid	62.16	58.97
CDY34832	Canola	plastid	62.16	58.97
KRH29491	Soybean	plastid	62.16	58.97
Bra016816.1-P	Field mustard	plastid	61.39	58.89
Solyc10g051310.1.1	Tomato	plastid	61.78	58.18
KRH24490	Soybean	plastid	61.0	57.88
PGSC0003DMT400084282	Potato	plastid	61.39	57.82
AT1G11750.2	Thale cress	plastid	62.16	55.71
CDY34630	Canola	plastid	30.5	44.38
CAA33972	Rice	cytosol	25.48	30.56
Os03t0308100-01	Rice	plastid	31.66	29.08
Os10t0580800-01	Rice	plastid	30.89	27.3
Os02t0634500-01	Rice	plastid	30.5	26.51
Os01t0507900-01	Rice	plastid	31.27	25.8
Os04t0525600-01	Rice	mitochondrion	30.5	25.57
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	24.71	21.48
Os06t0136800-01	Rice	plastid	23.94	20.88
Os03t0344900-00	Rice	plastid	24.32	18.48
Os05t0592100-01	Rice	plastid	22.78	15.29

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EntrezGene:4333096	ProteinID:AAO37504.2	ProteinID:ABF96569.1	EMBL:AK058696
EMBL:AK071057	ProteinID:BAF12263.1	ProteinID:BAS84665.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009507	GO:GO:0009532	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009658	GO:GO:0009840	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0016043
GO:GO:0016787	GO:GO:0019538	HAMAP:MF_00444	EnsemblPlantsGene:Os03g0411500	EnsemblPlants:Os03t0411500-01	PFAM:PF00574
PRINTS:PR00127	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF8	UniProt:Q852G0	MEROPS:S14.006
SUPFAM:SSF52096	UniParc:UPI00004B24CE	RefSeq:XP_015628632.1	:	:	:

Description

VIRESCENT-YELLOW LEAFSubunit of the chloroplast Clp (plastidic caseinolytic protease), Chloroplast biogenesis and leaf development (Os03t0411500-01)

Coordinates

chr3:+:16994268..16997702

Molecular Weight (calculated)

28188.4 Da

IEP (calculated)

7.942

GRAVY (calculated)

0.076

Length

259 amino acids

Sequence
(BLAST)

001: MAPMAISTPL ALRASPTRLL SRRRSGAKSG VALPGPQFVP PGISSKLDER IHCHSSLRKN TIVASENENP PLMPAIMTPA GALDLATVLL GNRIIFIGQY
101: INSQVAQRVI SQLVTLAAVD EEADILIYLN CPGGSLYSIL AIYDCMSWIK PKVGTVCFGV VASQAAIILA GGEKGMRYAM PNARVMIHQP QGVSEGNVEE
201: VRRQVGETIY ARDKVDKMFA AFTGQTLDMV QQWTERDRFM SSSEAMDFGL VDALLETRY

Best Arabidopsis Sequence Match ( AT1G11750.1 )
(BLAST)

001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP RFGVIEAKKG NPPVMPSVMT PGGPLDLSSV
101: LFRNRIIFIG QPINAQVAQR VISQLVTLAS IDDKSDILMY LNCPGGSTYS VLAIYDCMSW IKPKVGTVAF GVAASQGALL LAGGEKGMRY AMPNTRVMIH
201: QPQTGCGGHV EDVRRQVNEA IEARQKIDRM YAAFTGQPLE KVQQYTERDR FLSASEALEF GLIDGLLETE Y

Arabidopsis Description

CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.