Factsheet for TraesCS4B01G165100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G157200.1	Wheat	plastid	96.99	96.99
HORVU3Hr1G083440.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.07	93.51
TraesCS4A01G149900.1	Wheat	plastid	94.36	90.61
HORVU4Hr1G038160.2	Barley	plastid	87.22	81.98
Os03t0411500-01	Rice	plastid	79.32	81.47
EES07709	Sorghum	plastid	75.56	72.83
VIT_03s0063g02300.t01	Wine grape	plastid	57.89	57.25
GSMUA_Achr8P05270_001	Banana	plastid	56.02	56.02
KRH29491	Soybean	plastid	57.14	55.68
PGSC0003DMT400084282	Potato	plastid	57.52	55.64
CDY31211	Canola	plastid	56.39	55.56
CDY21009	Canola	plastid	56.39	55.56
Solyc10g051310.1.1	Tomato	plastid	56.77	54.91
CDY34832	Canola	plastid	56.02	54.58
Bra031777.1-P	Field mustard	plastid	56.02	54.58
Bra016816.1-P	Field mustard	plastid	55.26	54.44
KRH24490	Soybean	plastid	55.64	54.21
AT1G11750.2	Thale cress	plastid	56.77	52.25
CDY34630	Canola	plastid	25.94	38.76
TraesCS3B01G187300.1	Wheat	cytosol	25.56	31.48
TraesCS4B01G181600.1	Wheat	plastid	28.95	27.3
TraesCS2B01G393400.1	Wheat	plastid	30.08	27.03
TraesCS3B01G229600.1	Wheat	plastid	30.83	26.71
TraesCS1B01G213300.1	Wheat	plastid	28.95	26.01
TraesCS6B01G262000.1	Wheat	plastid	29.32	26.0
TraesCS3B01G216800.1	Wheat	plastid	22.56	21.05
TraesCS4B01G154900.3	Wheat	plastid	23.31	18.4
TraesCS1B01G472100.1	Wheat	plastid	20.68	14.29

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009532
GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009840
GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538
HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF8
SUPFAM:SSF52096	EnsemblPlantsGene:TraesCS4B01G165100	EnsemblPlants:TraesCS4B01G165100.1	TIGR:cd07017	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:347370199..347392467

Molecular Weight (calculated)

28838.8 Da

IEP (calculated)

7.789

GRAVY (calculated)

-0.011

Length

266 amino acids

Sequence
(BLAST)

001: MAIPTALAVR ASPSCQFSHS SSFACSPLSR RNGSSASRRL RGLQVLTSGV SARLDERIHS QSYPRKNTIV ASENENPPLM PAIMTPGGPL DLATVLLGNR
101: IIFIGQYVNS QVAQRVISQL VTLSAIDEEG DILIYLNCPG GSLYSILAIY DCMSWISPKV GTVCFGVVAS QAAIILAGGE KGMRYAMPNA RVMIHQPQGG
201: SEGNTEEVRR QVGETIYARD KVDKMFASFT GRPIDIVRQW TERDRFMSSS EAMDFGLVDA LLETGC

Best Arabidopsis Sequence Match ( AT1G11750.1 )
(BLAST)

001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP RFGVIEAKKG NPPVMPSVMT PGGPLDLSSV
101: LFRNRIIFIG QPINAQVAQR VISQLVTLAS IDDKSDILMY LNCPGGSTYS VLAIYDCMSW IKPKVGTVAF GVAASQGALL LAGGEKGMRY AMPNTRVMIH
201: QPQTGCGGHV EDVRRQVNEA IEARQKIDRM YAAFTGQPLE KVQQYTERDR FLSASEALEF GLIDGLLETE Y

Arabidopsis Description

CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.