Factsheet for TraesCS1B01G472100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G437500.2	Wheat	plastid	98.96	98.45
TraesCS1D01G445300.1	Wheat	plastid	99.22	98.2
EES20050	Sorghum	plastid	88.31	87.63
Zm00001d039167_P001	Maize	plastid	87.53	86.86
Os05t0592100-01	Rice	plastid	87.01	86.79
HORVU1Hr1G094480.1	Barley	plastid	94.55	85.85
KRG91103	Soybean	plastid	52.73	54.57
KRH35674	Soybean	plastid	52.73	54.57
GSMUA_Achr2P08390_001	Banana	plastid	55.58	53.77
VIT_03s0091g00700.t01	Wine grape	plastid	52.47	52.06
AT1G49970.1	Thale cress	plastid	52.21	51.94
PGSC0003DMT400065220	Potato	plastid	52.99	51.91
CDY03582	Canola	plastid	51.95	51.41
Solyc10g049710.1.1	Tomato	plastid	51.17	51.3
Bra014229.1-P	Field mustard	plastid	51.69	51.29
CDY59367	Canola	plastid	51.69	51.29
CDY46278	Canola	cytosol	29.87	50.88
TraesCS3B01G216800.1	Wheat	plastid	23.64	31.93
TraesCS4B01G154900.3	Wheat	plastid	23.9	27.3
TraesCS4B01G181600.1	Wheat	plastid	18.44	25.18
TraesCS1B01G213300.1	Wheat	plastid	18.18	23.65
TraesCS3B01G187300.1	Wheat	cytosol	12.99	23.15
TraesCS6B01G262000.1	Wheat	plastid	17.4	22.33
TraesCS2B01G393400.1	Wheat	plastid	17.14	22.3
TraesCS3B01G229600.1	Wheat	plastid	17.66	22.15
TraesCS4B01G165100.1	Wheat	plastid	14.29	20.68

Protein Annotations

EnsemblPlants:TraesCS1B01G472100.1	EnsemblPlantsGene:TraesCS1B01G472100	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	PANTHER:PTHR10381	PANTHER:PTHR10381:SF18	PFAM:PF00574	PRINTS:PR00127
SEG:seg	SUPFAM:SSF52096	TIGR:cd07017	MapMan:19.4.2.9.2	:	:

Description

No Description!

Coordinates

chr1B:-:679753656..679757670

Molecular Weight (calculated)

42536.8 Da

IEP (calculated)

9.320

GRAVY (calculated)

-0.478

Length

385 amino acids

Sequence
(BLAST)

001: MALALRCPAA ASPSRAPFPN SSSHSQSAAR PARRPAGGCR CHYYHGDGPP RSYDHIPKQF REENLKDGLM DNYKNVPQFL YGLSPSQMEM FTTDDNPYNR
101: QSKKVTEESV AALRSYDEFG MYSLSGTHEG PASYSMGMGM PSMSMGRAGK GYRRMRSSAP DLPSLLLDSR IIFLGMPIVP AVTELIAAQF LWLDYDDRTK
201: PIYLYINSTG TMDENNELVA SETDAYAIAD FINRSKAKVY TINLSMAYGQ AAMLLSLGMK GKRGVLPNSI TKLHLPKVHK SGGAAIDMWI KAKELETNTD
301: YYLELVSQGV GKPKEELAEF LRGPRYFRAQ EAIDYGLADT ILHSLDGSFK PKDLTAQLAK AQEMRQSGKR APAGAGRWST PTAPR

Best Arabidopsis Sequence Match ( AT1G49970.1 )
(BLAST)

001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR

Arabidopsis Description

CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.