Factsheet for Zm00001d039167_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES20050	Sorghum	plastid	96.91	96.91
Os05t0592100-01	Rice	plastid	90.46	90.93
TraesCS1B01G472100.1	Wheat	plastid	86.86	87.53
TraesCS1A01G437500.2	Wheat	plastid	87.11	87.34
TraesCS1D01G445300.1	Wheat	plastid	86.86	86.63
HORVU1Hr1G094480.1	Barley	plastid	86.08	78.77
GSMUA_Achr2P08390_001	Banana	plastid	56.7	55.28
KRG91103	Soybean	plastid	52.58	54.84
KRH35674	Soybean	plastid	52.58	54.84
VIT_03s0091g00700.t01	Wine grape	plastid	53.35	53.35
AT1G49970.1	Thale cress	plastid	52.84	52.97
CDY03582	Canola	plastid	52.84	52.7
Bra014229.1-P	Field mustard	plastid	52.32	52.32
CDY59367	Canola	plastid	52.32	52.32
CDY46278	Canola	cytosol	30.41	52.21
PGSC0003DMT400065220	Potato	plastid	52.32	51.65
Solyc10g049710.1.1	Tomato	plastid	50.77	51.3
Zm00001d040322_P002	Maize	plastid	23.45	31.49
Zm00001d047634_P002	Maize	cytosol	17.27	28.39
Zm00001d029121_P005	Maize	plastid	23.97	27.43
Zm00001d002969_P001	Maize	mitochondrion	17.01	25.48
Zm00001d025891_P001	Maize	mitochondrion	17.01	25.38
Zm00001d028895_P001	Maize	plastid	19.85	24.6
GRMZM5G804708_P01	Maize	plastid	13.14	23.61
Zm00001d017330_P001	Maize	plastid	17.01	23.4
Zm00001d051203_P001	Maize	plastid	17.27	22.04
Zm00001d009339_P001	Maize	plastid	17.53	21.94
Zm00001d045430_P002	Maize	plastid	17.78	21.3
Zm00001d030149_P001	Maize	mitochondrion	17.01	20.75

Protein Annotations

EntrezGene:100274001	MapMan:19.4.2.9.2	Gene3D:3.90.226.10	ProteinID:AQK88964.1	UniProt:B4F9Z4	EMBL:BT033932
InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016787	GO:GO:0019538
PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF18	SUPFAM:SSF52096	UniParc:UPI00017B60E2
EnsemblPlantsGene:Zm00001d039167	EnsemblPlants:Zm00001d039167_P001	EnsemblPlants:Zm00001d039167_T001	SEG:seg	:	:

Description

ATP-dependent Clp protease proteolytic subunit

Coordinates

chr6:+:171659500..171663327

Molecular Weight (calculated)

42871.4 Da

IEP (calculated)

9.515

GRAVY (calculated)

-0.419

Length

388 amino acids

Sequence
(BLAST)

001: MALALRCPPA ATSSRSPFLP STSPAPAGKV PRRPPASWRC LAYYGDGGFR KNYDHIPKQF REENLKDGLM DNYKHVPQFL YGLSDAQMEM FMNDDNPYNR
101: QSQKVTEESV SAARSYDEFG MYTLSGMHEG PASYSMGMGM GGSMSMSMGR GGRGYRRMRS SAPDLPSLLL DSRIIFLGMP IVPAVTELIA AQFLWLDYDD
201: RTKPIYLYIN STGTMDENNE LVASETDAYA IADFINRSKS KVYTINLSMA YGQAAMLLSL GVKGKRGVLP NSITKLHLPK VHKSGGAAID MWIKAKELDT
301: NTDYYLELLS KGVGKPKEEL AEFLRGPRYF RAQEALDYGL ADTILHSLDG SFKPKDLTAQ LAKAQAMRQS GKRAAAGAGR WSTPTAPR

Best Arabidopsis Sequence Match ( AT1G49970.1 )
(BLAST)

001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR

Arabidopsis Description

CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.