Factsheet for GRMZM5G804708_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009339_P001
Zm00001d028414_P002
Zm00001d028895_P001
Zm00001d030149_P001
Zm00001d039167_P001
Zm00001d040322_P002
Zm00001d045430_P002
Zm00001d047634_P002
Zm00001d047920_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00670.1	Zm00001d028895_P001	AT1G02560.1	14593120
ATCG00670.1	Zm00001d047634_P002	AT1G02560.1	14593120
ATCG00670.1	Zm00001d045430_P002	AT1G12410.1	14593120
ATCG00670.1	Zm00001d039167_P001	AT1G49970.1	14593120
ATCG00670.1	Zm00001d009339_P001	AT1G66670.1	14593120
ATCG00670.1	Zm00001d028414_P002	AT4G12060.1	14593120
ATCG00670.1	Zm00001d047920_P003	AT4G12060.1	14593120
ATCG00670.1	Zm00001d040322_P002	AT4G17040.1	14593120
ATCG00670.1	Zm00001d028414_P002	AT4G25370.1	14593120
ATCG00670.1	Zm00001d047920_P003	AT4G25370.1	14593120
ATCG00670.1	Zm00001d030149_P001	AT5G45390.1	14593120

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G053800.1	Barley	endoplasmic reticulum	63.43	98.56
TraesCSU01G266900.1	Wheat	cytosol	81.94	97.79
HORVU0Hr1G027550.1	Barley	cytosol	97.69	97.69
HORVU5Hr1G065060.1	Barley	cytosol	97.69	97.69
HORVU7Hr1G065830.1	Barley	cytosol	97.69	97.69
TraesCS3B01G187300.1	Wheat	cytosol	97.22	97.22
CAA33972	Rice	cytosol	96.76	96.76
TraesCS1D01G182500.1	Wheat	cytosol, peroxisome, plastid	80.56	96.13
TraesCS1A01G111400.1	Wheat	cytosol	50.46	95.61
HORVU3Hr1G044750.2	Barley	cytosol	56.02	87.68
ATCG00670.1	Thale cress	cytosol	61.11	67.35
PGSC0003DMT400055547	Potato	cytosol	21.3	66.67
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	30.09	61.9
Solyc01g007490.2.1	Tomato	plastid	57.41	60.19
Solyc09g065790.1.1	Tomato	cytosol	30.56	37.5
Zm00001d047634_P002	Maize	cytosol	31.48	28.81
Zm00001d002969_P001	Maize	mitochondrion	28.7	23.94
Zm00001d025891_P001	Maize	mitochondrion	28.7	23.85
Zm00001d030149_P001	Maize	mitochondrion	34.26	23.27
Zm00001d045430_P002	Maize	plastid	34.26	22.84
Zm00001d009339_P001	Maize	plastid	32.41	22.58
Zm00001d028895_P001	Maize	plastid	31.02	21.41
Zm00001d017330_P001	Maize	plastid	27.31	20.92
Zm00001d051203_P001	Maize	plastid	28.7	20.39
Zm00001d040322_P002	Maize	plastid	23.61	17.65
Zm00001d029121_P005	Maize	plastid	23.15	14.75
Zm00001d039167_P001	Maize	plastid	23.61	13.14

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EntrezGene:845176	ProteinID:AAA85358.1	ProteinID:CAA43038.1	ProteinID:CAA60310.1
InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GRMZM5G804708	EnsemblPlants:GRMZM5G804708_P01
EnsemblPlants:GRMZM5G804708_T01	HAMAP:MF_00444	UniProt:P26567	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381
ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF19	MEROPS:S14.002	SUPFAM:SSF52096	TMHMM:TMhelix
UniParc:UPI0000127B45	:	:	:	:	:

Description

clpPATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P26567]

Coordinates

chrPt:-:66312..70204

Molecular Weight (calculated)

24760.0 Da

IEP (calculated)

4.382

GRAVY (calculated)

0.040

Length

216 amino acids

Sequence
(BLAST)

001: MPIGVPKVPY RIPGDEEATW VDLYNVMYRE RTLFLGQEIR CEITNHITGL MVYLSIEDGN SDIFLFINSL GGWLISGMAI FDTMQTVTPD IYTICLGIAA
101: SMASFILLGG EPTKRIAFPH ARIMLHQPAS AYYRARTPEF LLEVEELHKV REMITRVYAL RTGKPFWVVS EDMERDVFMS ADEAKAYGLV DIVGDEMIDE
201: HCDTDPVWFP EMFKDW

Best Arabidopsis Sequence Match ( ATCG00670.1 )
(BLAST)

001: MPIGVPKVPF RSPGEGDTSW VDIYNRLYRE RLFFLGQEVD TEISNQLISL MIYLSIEKDT KDLYLFINSP GGWVISGMAI YDTMQFVRPD VQTICMGLAA
101: SIASFILVGG AITKRIAFPH ARVMIHQPAS SFYEAQTGEF ILEAEELLKL RETITRVYVQ RTGKPIWVIS EDMERDVFMS ATEAQAHGIV DLVAVQ

Arabidopsis Description

CLPP1plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.