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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
plastid: 22065420
plastid: 23198870
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU92609 Sorghum plastid 94.69 94.69
Os03t0344900-00 Rice plastid 92.04 91.5
TraesCS4B01G154900.3 Wheat plastid 88.5 89.02
TraesCS4D01G167900.1 Wheat golgi, plastid 87.91 88.43
TraesCS4A01G139700.3 Wheat plastid 87.91 88.43
HORVU4Hr1G046480.1 Barley plastid 88.2 80.38
CDY71339 Canola endoplasmic reticulum 25.96 68.75
VIT_14s0060g02160.t01 Wine grape plastid 63.13 66.46
KRG96809 Soybean plastid 60.77 63.0
KRH68514 Soybean plastid 59.88 62.65
Bra030756.1-P Field mustard plastid 59.0 61.92
CDY31112 Canola plastid 59.0 61.92
GSMUA_Achr3P08150_001 Banana plastid 60.77 61.13
CDY32150 Canola plastid 58.41 60.92
Solyc01g099690.2.1 Tomato plastid 56.93 59.2
CDX95009 Canola plastid 51.03 56.35
AT1G09130.3 Thale cress plastid 57.82 52.97
Zm00001d040322_P002 Maize plastid 30.68 35.99
Zm00001d025891_P001 Maize mitochondrion 25.66 33.46
Zm00001d002969_P001 Maize mitochondrion 24.78 32.43
Zm00001d017330_P001 Maize plastid 25.07 30.14
Zm00001d047634_P002 Maize cytosol 20.94 30.08
Zm00001d051203_P001 Maize plastid 25.66 28.62
Zm00001d039167_P001 Maize plastid 27.43 23.97
Zm00001d028895_P001 Maize plastid 21.83 23.64
GRMZM5G804708_P01 Maize plastid 14.75 23.15
Zm00001d030149_P001 Maize mitochondrion 20.35 21.7
Zm00001d009339_P001 Maize plastid 18.88 20.65
Zm00001d045430_P002 Maize plastid 18.29 19.14
Protein Annotations
EntrezGene:100282645MapMan:19.4.2.9.2Gene3D:3.90.226.10UniProt:B6T9T4InterPro:ClpPInterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sfEMBL:EU961749GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0008233GO:GO:0009507GO:GO:0009532GO:GO:0009536GO:GO:0009570
GO:GO:0009579GO:GO:0009941GO:GO:0016787GO:GO:0019538ProteinID:ONL97979.1PFAM:PF00574
PRINTS:PR00127PANTHER:PTHR10381PANTHER:PTHR10381:SF6SUPFAM:SSF52096UniParc:UPI000182C8A2EnsemblPlantsGene:Zm00001d029121
EnsemblPlants:Zm00001d029121_P005EnsemblPlants:Zm00001d029121_T005SEG:seg:::
Description
ATP-dependent Clp protease proteolytic subunit
Coordinates
chr1:-:58944824..58953954
Molecular Weight (calculated)
36995.0 Da
IEP (calculated)
9.580
GRAVY (calculated)
-0.180
Length
339 amino acids
Sequence
(BLAST)
001: MTSASTFLSL RLPTPSHATS SLSFPPSLLR QARGGVASST LVARAAGPTG AAGAPSPLFN PRGDPFLSTL AAASPEDLAA AAGGERRGED HLPFLEIFQN
101: TKLMASPAQV ERSSSSYSQH RPRRPPPDLP SLLLHGRIVY IGMPLVPAVT ELIVAQLMYL EWMNSKEPVY IYINSTGTAR DDGEPVGMES EGFAIYDAMM
201: RMKTEIHTLC IGAAAGHACL VLAAGKKGKR YMFPHAKAMI QQPRIPSYGM MQASDVVIRA KEVVHNRNTL VKLLARHTGN PPEKIDKVMR GPFYMDSLKA
301: KEFGVIDKIL WRGQEKYMAD MLSPDEWDKV AGVRHPDLM
Best Arabidopsis Sequence Match ( AT1G09130.1 )
(BLAST)
001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSVV
Arabidopsis Description
ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.