Factsheet for Os03t0344900-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92609	Sorghum	plastid	92.38	92.92
Zm00001d029121_P005	Maize	plastid	91.5	92.04
TraesCS4B01G154900.3	Wheat	plastid	84.75	85.76
TraesCS4D01G167900.1	Wheat	golgi, plastid	84.46	85.46
TraesCS4A01G139700.3	Wheat	plastid	84.46	85.46
HORVU4Hr1G046480.1	Barley	plastid	84.75	77.69
CDY71339	Canola	endoplasmic reticulum	25.81	68.75
VIT_14s0060g02160.t01	Wine grape	plastid	63.34	67.08
KRG96809	Soybean	plastid	61.0	63.61
KRH68514	Soybean	plastid	59.53	62.65
Bra030756.1-P	Field mustard	plastid	58.65	61.92
CDY31112	Canola	plastid	58.65	61.92
GSMUA_Achr3P08150_001	Banana	plastid	60.7	61.42
CDY32150	Canola	plastid	58.06	60.92
Solyc01g099690.2.1	Tomato	plastid	57.77	60.43
CDX95009	Canola	plastid	50.44	56.03
AT1G09130.3	Thale cress	plastid	58.94	54.32
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	30.21	34.56
Os02t0634500-01	Rice	plastid	25.81	29.53
Os04t0525600-01	Rice	mitochondrion	25.22	27.83
Os03t0308100-01	Rice	plastid	21.11	25.53
Os05t0592100-01	Rice	plastid	27.86	24.61
Os03t0411500-01	Rice	plastid	18.48	24.32
Os06t0136800-01	Rice	plastid	20.82	23.91
CAA33972	Rice	cytosol	14.96	23.61
Os10t0580800-01	Rice	plastid	20.23	23.55
Os01t0507900-01	Rice	plastid	20.23	21.97

Protein Annotations

MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EntrezGene:4332811	ProteinID:ABF95892.1	ProteinID:BAS84154.1	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	ProteinID:EEE59045.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:Os03g0344900	EnsemblPlants:Os03t0344900-00	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381
PANTHER:PTHR10381:SF6	UniProt:Q10LK7	SUPFAM:SSF52096	UniParc:UPI0000DB423F	RefSeq:XP_015628188.1	RefSeq:XP_015628189.1
SEG:seg	:	:	:	:	:

Description

Clp protease 5, CLP PROTEASE 5Similar to ATP-dependent Clp protease proteolytic subunit. (Os03t0344900-00)

Coordinates

chr3:-:12854376..12859361

Molecular Weight (calculated)

37026.0 Da

IEP (calculated)

9.847

GRAVY (calculated)

-0.172

Length

341 amino acids

Sequence
(BLAST)

001: MASASLSLRL PTPSTAPSSG ASSSFLSLPP TLLRQARGGA AASSALVARA ASGGSPNPLF NPRADPFLST LAAASPEELQ AAAAGGGRRG DDHLPFLEIF
101: QNAKLMASPA QVERSSSSYS QHRPRRPPPD LPSLLLHGRI VYIGMPLVPA VTELVVAQLM YLEWMNSKEP VYIYINSTGT ARDDGEPVGM ESEGFAIYDA
201: MMRMKTEIHT LCIGAAAGHA CLVLAAGKKG KRYMFPHAKA MIQQPRIPSY GMMQASDVVI RAKEVVHNRN TLVRLLARHT GNPPEKIDKV MRGPFYMDSL
301: KAKEFGVIDK ILWRGQEKYM ADMLSPEEWD KVAGVRRPDI M

Best Arabidopsis Sequence Match ( AT1G09130.3 )
(BLAST)

001: MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS
101: PAQVERSVAY NEHRPRTPPP DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG MESEGFAIYD SLMQLKNEVH
201: TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID
301: RILWRGQEKI IADVVPSEEF DKNAGIKSAS WRRTNRLTKI TLAADCLVSN HLVNVNMRLG ESYLKDLEIL

Arabidopsis Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.