CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68514	Soybean	plastid	93.58	94.44
VIT_14s0060g02160.t01	Wine grape	plastid	78.9	80.12
CDY71339	Canola	endoplasmic reticulum	30.28	77.34
Bra030756.1-P	Field mustard	plastid	73.39	74.3
CDY31112	Canola	plastid	73.39	74.3
Solyc01g099690.2.1	Tomato	plastid	73.39	73.62
CDY32150	Canola	plastid	72.78	73.23
CDX95009	Canola	plastid	65.44	69.71
GSMUA_Achr3P08150_001	Banana	plastid	69.42	67.36
AT1G09130.3	Thale cress	plastid	75.23	66.49
Os03t0344900-00	Rice	plastid	63.61	61.0
Zm00001d029121_P005	Maize	plastid	63.0	60.77
OQU92609	Sorghum	plastid	63.0	60.77
TraesCS4D01G167900.1	Wheat	golgi, plastid	61.77	59.94
TraesCS4B01G154900.3	Wheat	plastid	61.47	59.64
TraesCS4A01G139700.3	Wheat	plastid	61.47	59.64
HORVU4Hr1G046480.1	Barley	plastid	61.77	54.3
KRH04225	Soybean	plastid	32.72	35.2
KRH57519	Soybean	plastid	31.19	33.55
KRH29139	Soybean	mitochondrion, nucleus	22.32	30.67
KRH24178	Soybean	mitochondrion	21.71	30.08
KRH35674	Soybean	plastid	32.42	28.49
KRG91103	Soybean	plastid	32.42	28.49
KRH29491	Soybean	plastid	22.02	26.37
KRH24490	Soybean	plastid	21.41	25.64
KRH39679	Soybean	nucleus, plastid	23.85	25.49
KRH76388	Soybean	nucleus, plastid	23.55	25.16
KRH31786	Soybean	nucleus, plastid	21.71	23.43
KRH69210	Soybean	nucleus, plastid	22.02	23.15
KRH57313	Soybean	endoplasmic reticulum, extracellular	20.18	21.15
KRH70450	Soybean	plastid	20.18	20.69
KRH68271	Soybean	plastid	18.96	20.6
KRH01676	Soybean	plastid	20.18	20.5
KRH04045	Soybean	mitochondrion	20.18	19.24

Protein Annotations

EntrezGene:100818038	MapMan:19.4.2.9.2	Gene3D:3.90.226.10	EMBL:ACUP02012163	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	EnsemblPlantsGene:GLYMA_19G233600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:I1NBX9	EnsemblPlants:KRG96809
ProteinID:KRG96809	ProteinID:KRG96809.1	PFAM:PF00574	PRINTS:PR00127	PANTHER:PTHR10381	PANTHER:PTHR10381:SF6
MEROPS:S14.003	SUPFAM:SSF52096	UniParc:UPI000233E8DA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:48330184..48334467

Molecular Weight (calculated)

36063.1 Da

IEP (calculated)

9.206

GRAVY (calculated)

-0.203

Length

327 amino acids

Sequence
(BLAST)

001: MAMVGGTMMA AYLRVSMPTS PQSPTTTRRR CRNLKTSCSV NRPKIPMPPL NPKDPFLSKL ASVAASSPET LLNTPKNSDT LPYLDIFDSP KLMATPAQVE
101: RSVSYNEHRP RRPPPDLPSL LLHGRIVYIG MPLVPAVTEL VVAELMYLQY MDPKEPIYIY INSTGTTRDD GETVGMETEG FAIYDAMMQL KNEIHTVAVG
201: SAIGQACLLL SAGSPGKRFM MPHAKAMIQQ PRIPSSGLMP ASDVLIRAKE VIINRDNLVK LLAKHTGNSE ETVANVMKRP YYMDATRAKE FGVIDRILWR
301: GQEKVMADVA SPDDWDKGAG IKIVDGF

Best Arabidopsis Sequence Match ( AT1G49970.1 )
(BLAST)

001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR

Arabidopsis Description

CLPR1ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.